PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC001177.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 42852.1 Da PI: 8.1771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 218 | 264 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed +l +v+ +G+++W+ Ia++m gR +kqc++rw+++l EcC001177.20 218 KGQWTPTEDRRLMMLVETHGMKRWSQIAQMMK-GRDGKQCRERWHNHL 264 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.4e-18 | 270 | 312 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+ eEd++l++a+kq G++ W+ Ia++++ gRt++++k++w+ EcC001177.20 270 KESWSIEEDKILIQAHKQIGNK-WAEIAKRLP-GRTENSIKNHWN 312 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.092 | 213 | 268 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-31 | 217 | 311 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 217 | 266 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 219 | 272 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.9E-17 | 221 | 278 | No hit | No description |
CDD | cd00167 | 5.07E-14 | 221 | 264 | No hit | No description |
SMART | SM00717 | 1.1E-15 | 269 | 317 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.899 | 269 | 319 | IPR017930 | Myb domain |
CDD | cd00167 | 1.86E-12 | 272 | 315 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-22 | 273 | 318 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0030488 | Biological Process | tRNA methylation | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0031515 | Cellular Component | tRNA (m1A) methyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016429 | Molecular Function | tRNA (adenine-N1-)-methyltransferase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MELNLGFSLD LETPPPPPLN VKGFFYNLLH SRSPDILDDD HAFTIEGSSS NPFSRVVSTP 60 QLEPSFPHPC PDPNPAATLP REFDLCAPPL PPTPPPPSME TSPESSDGIV AHGQLDFKSL 120 FHYGPVDQRP YHDPVTEDRQ VVPLLDLNDL GSPNERLGEE AGVSSDHQWG RERDDGRHDR 180 RKREVATGLP QHQSKQKTEK NKKENDKDEA DEEPLVVKGQ WTPTEDRRLM MLVETHGMKR 240 WSQIAQMMKG RDGKQCRERW HNHLRPDIKK ESWSIEEDKI LIQAHKQIGN KWAEIAKRLP 300 GRTENSIKNH WNATKRRQFT KRKLLPDGNN SNLLQNYIRS VTTPSPPKWS PPARGPDHRH 360 HNTKKQSLSL SKAAIS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-44 | 215 | 319 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-44 | 215 | 319 | 1 | 105 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018717997.1 | 0.0 | PREDICTED: uncharacterized protein LOC104420634 | ||||
STRING | XP_010030743.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5869 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-63 | myb domain protein 98 |