PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC001127.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | G2-like | ||||||||
Protein Properties | Length: 375aa MW: 41405.1 Da PI: 4.8533 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.1e-33 | 177 | 231 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpe He+Fveav+qLGGs++AtPk +l+lm+v+gLt++hvkSHLQkYR+ EcC001127.10 177 KARMRWTPEHHEAFVEAVNQLGGSDRATPKGVLKLMNVEGLTIYHVKSHLQKYRT 231 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.82 | 174 | 234 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-18 | 175 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-31 | 175 | 233 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-24 | 177 | 231 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-9 | 179 | 230 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.9E-22 | 264 | 310 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
VTQMLFKNGT VGSGLSSASG CTSDICFSSP QQPERHAQYS PFISPASMIR TSTPPIGFPR 60 TEVQATALTD IPKESKDVLW DPNQLQDFLY SENVPSQNVQ LESSRGAVVG CDNQSAGSDL 120 IWTENFGEAM DLDWSKFLAD DDAIEPSKPP LAVQGQSLPP AESSAAANQL SSAPSSKARM 180 RWTPEHHEAF VEAVNQLGGS DRATPKGVLK LMNVEGLTIY HVKSHLQKYR TARYKPDSAE 240 SEGSSEKKLS SLEDMKSLDL KATMNITEAL RMQMEVQKQL HEQLEIQRKL QLRIEEQGRC 300 LQMLFEKQRN QTEATEQPEA EKGLETTNPS SSPGESSLNM NKRQKVSEAR TTDDDNPDEG 360 EMGLPSPKRV RGHEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-31 | 177 | 235 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043309.1 | 0.0 | PREDICTED: myb family transcription factor PHL13 | ||||
Swissprot | Q8GUN5 | 3e-71 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A059D520 | 0.0 | A0A059D520_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043308.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 3e-60 | G2-like family protein |
Publications ? help Back to Top | |||
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