PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000651.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 304aa MW: 32752.5 Da PI: 6.8408

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000651.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C++ Fs++ L H++ H EcC000651.20 112 FACNFCKREFSTSQALGGHQNAH 134 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.04E-6	109	140	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-4	110	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.489	112	139	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAIVPCPSEG PSISAASGET LACDNHRHKA KNRLTMNEKT AEAEAEAEAK PKPAPHHHAA 60 NQEIPIDDDD DGGVRSTDLD LKLFNQGLPS NARKSGESST DENCKVPKAR VFACNFCKRE 120 FSTSQALGGH QNAHKQERAL AKQRKGMEAD LLGVHPHMSY YYSGVPQMPL YGSIGRALGI 180 RHESMIHKPS YPSSVLPGYR FGGLRQVSGV NPNSRPPLDR TRVESLQAYG GASGLGEPPP 240 PPPPPPPPPA TSFDGSASFV VHQAQVDVRQ DNNRPMKKEG DHPEEEVPQS DGSDPSGIDL 300 TLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026900.1	0.0	PREDICTED: zinc finger protein 8
TrEMBL	A0A059B2R4	0.0	A0A059B2R4_EUCGR; Uncharacterized protein
STRING	XP_010026900.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-21	C2H2 family protein