PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000419.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YB

Protein Properties

Length: 120aa MW: 13565.4 Da PI: 5.9497

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000419.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	155.9	6.6e-49	13	108	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk+vlP nakisk++ket+qecvsefi+fvtseas+kc++e+rkt+ngdd++ a+ t+Gf+dy+ l+ yl+ yr legek EcC000419.20 13 KEQDRLLPIANVGRIMKQVLPPNAKISKQTKETMQECVSEFIGFVTSEASEKCRKERRKTVNGDDICCAMETMGFDDYAGLLRRYLHIYRGLEGEK 108 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-46	8	118	IPR009072	Histone-fold
SuperFamily	SSF47113	1.4E-35	15	117	IPR009072	Histone-fold
Pfam	PF00808	2.7E-25	18	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.4E-14	46	64	No hit	No description
PRINTS	PR00615	6.4E-14	65	83	No hit	No description
PRINTS	PR00615	6.4E-14	84	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MEDNVGSDEG STKEQDRLLP IANVGRIMKQ VLPPNAKISK QTKETMQECV SEFIGFVTSE 60 ASEKCRKERR KTVNGDDICC AMETMGFDDY AGLLRRYLHI YRGLEGEKAN QVKAMNNTQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-41	13	102	2	91	Transcription factor HapC (Eurofung)
4g92_B	3e-41	13	102	2	91	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037376.1	6e-68	PREDICTED: nuclear transcription factor Y subunit B-5
Swissprot	O82248	3e-53	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A059D2P9	1e-83	A0A059D2P9_EUCGR; Uncharacterized protein
STRING	XP_010037234.1	1e-72	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-55	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]