PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000253.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 354aa    MW: 38054.8 Da    PI: 9.6435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000253.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20139188255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae+Aa+a+++a+++++g
  EcC000253.10 139 KYRGVRQRP-WGKWAAEIRDpF-----KaSRVWLGTFDTAEGAARAYDRAALQFRG 188
                   8********.**********66.....56***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-33138197IPR001471AP2/ERF domain
CDDcd000188.98E-33139198No hitNo description
PROSITE profilePS5103225.33139196IPR001471AP2/ERF domain
SMARTSM003803.9E-37139202IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22139197IPR016177DNA-binding domain
PfamPF008471.0E-13139188IPR001471AP2/ERF domain
PRINTSPR003671.3E-11140151IPR001471AP2/ERF domain
PRINTSPR003671.3E-11162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSIMVSALRR VVSGEVLSGD DQQQQFNLSG GYCSRDGPAS LLGRSSSLDS VGVGQKRGRG  60
DSTLSSEFSV SQDSVALGGF PQAGSSSSSD AREGPAGSTT VETEKAERPA HGTAPKYEYA  120
YEAPTTMAAS RLDPTVRRKY RGVRQRPWGK WAAEIRDPFK ASRVWLGTFD TAEGAARAYD  180
RAALQFRGSK AKLNFPENVR LRQQPAPVAS AAFPSATHFT ISRELPASGN FDATGYDGQA  240
PMQQFPENDF RAYHRDVAAH QERLQGRTMS LYEQMLLSNS SFGSQFQPAF SLSPSSSSSS  300
SSVLARSPNS SLFMPSPPNV TSRSQESRRG SGDGVAVFSQ PPWTDSSHYS SSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22138199466ATERF1
3gcc_A1e-22138199466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027737.10.0PREDICTED: ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A059AJY40.0A0A059AJY4_EUCGR; Uncharacterized protein
STRINGXP_010027737.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-26related to AP2 6