PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000151.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 789aa MW: 87731.7 Da PI: 4.828

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000151.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.4	1.4e-114	412	786	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+avs++d++ a +lL+++++ +s +gd qRla+yf+++L+arla+s + +se ++++++++l+a++l ++P+ k+ l EcC000151.30 412 LRSLLILCAQAVSANDFRTAYELLKQIRQDSSASGDGSQRLAHYFANGLEARLAGSAGDRQTFFYSSELQKRTVADKLKAYQLHLSACPFKKLPILF 508 6899*************************************************999999999**9********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN +l+ +++++ +HiiDf+is G+QWp L+q+L++R++gpp+lRiTg++ p+sg ++++eetg rLak++e+++vpfef+++ ++++e++++e EcC000151.30 509 ANVVLLKIAATAKVLHIIDFGISFGFQWPILIQELSKRDGGPPELRITGIEIPQSGfrPAKRIEETGCRLAKYCERFKVPFEFHAIPSRNWECIRVE 605 ***************************************************9*************************9999**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L++++gE +aVn+ + ++l+de+v+++ +rd+vL+l++s++P+v+v+ ++ ++n++ Fl+rf eal + sa++d+l+a++p+++++r++vEre+ EcC000151.30 606 DLKIRSGEIIAVNCLSRFKNLYDETVEVDCPRDAVLRLIRSIKPDVFVHGISNGSYNAPFFLTRFREALFHLSAIYDMLDATVPSDNDQRVVVEREF 702 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 grei+nvvaceg er+er et+++W+ r+ +aGF+++pl++++++ a++ +++++ + + + ees++++lgW++r + ++++W EcC000151.30 703 YGREIMNVVACEGLERIERPETYKQWQVRVARAGFTQLPLDQEVMEMARTKMSRHYPKDFVLAEESKWMLLGWRGRIISACTCW 786 ****************************************************777*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.189	386	767	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-112	412	786	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MESNFTGFTH AADDFGTNSL AHPANSDHPS NLLDGFNVND LYVDFNSTEI TSLLYQTEPA 60 YDNPSAAVNL DGDFDFPSTD VSSKDASLQH STISNGSPSQ GGESFSPPSD YSNSTDPVLR 120 YIHQMLVEEN VEEQPWISPD DFALQDTEKS LYDLLGENST FSPEPAVQFD INQFIDSPSS 180 NSYENSSDQG GDGTTDTRTN CSQFSGPNSP DNPEGKNQAV LQGPYPGNGV LPSNMGTSSQ 240 LHTNPMGSLQ HQDEFSDSFP SDLLVSNMFS NSNSILQFNK GLEEARKFLP SSIQLTINQE 300 DYKSAPNVRE PGENGTDDGK SVKSRSESGS WGRKNHERDD ESFEEGRANK QSASYTEDGE 360 LSEMLDKVLL GCGLGGQMSG CTPENMSQSK GPPGPKGGRV RRKKGNKSTA DLRSLLILCA 420 QAVSANDFRT AYELLKQIRQ DSSASGDGSQ RLAHYFANGL EARLAGSAGD RQTFFYSSEL 480 QKRTVADKLK AYQLHLSACP FKKLPILFAN VVLLKIAATA KVLHIIDFGI SFGFQWPILI 540 QELSKRDGGP PELRITGIEI PQSGFRPAKR IEETGCRLAK YCERFKVPFE FHAIPSRNWE 600 CIRVEDLKIR SGEIIAVNCL SRFKNLYDET VEVDCPRDAV LRLIRSIKPD VFVHGISNGS 660 YNAPFFLTRF REALFHLSAI YDMLDATVPS DNDQRVVVER EFYGREIMNV VACEGLERIE 720 RPETYKQWQV RVARAGFTQL PLDQEVMEMA RTKMSRHYPK DFVLAEESKW MLLGWRGRII 780 SACTCWVPI

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MESNFTGFTH AADDFGTNSL AHPANSDHPS NLLDGFNVND LYVDFNSTEI TSLLYQTEPA  60
YDNPSAAVNL DGDFDFPSTD VSSKDASLQH STISNGSPSQ GGESFSPPSD YSNSTDPVLR  120
YIHQMLVEEN VEEQPWISPD DFALQDTEKS LYDLLGENST FSPEPAVQFD INQFIDSPSS  180
NSYENSSDQG GDGTTDTRTN CSQFSGPNSP DNPEGKNQAV LQGPYPGNGV LPSNMGTSSQ  240
LHTNPMGSLQ HQDEFSDSFP SDLLVSNMFS NSNSILQFNK GLEEARKFLP SSIQLTINQE  300
DYKSAPNVRE PGENGTDDGK SVKSRSESGS WGRKNHERDD ESFEEGRANK QSASYTEDGE  360
LSEMLDKVLL GCGLGGQMSG CTPENMSQSK GPPGPKGGRV RRKKGNKSTA DLRSLLILCA  420
QAVSANDFRT AYELLKQIRQ DSSASGDGSQ RLAHYFANGL EARLAGSAGD RQTFFYSSEL  480
QKRTVADKLK AYQLHLSACP FKKLPILFAN VVLLKIAATA KVLHIIDFGI SFGFQWPILI  540
QELSKRDGGP PELRITGIEI PQSGFRPAKR IEETGCRLAK YCERFKVPFE FHAIPSRNWE  600
CIRVEDLKIR SGEIIAVNCL SRFKNLYDET VEVDCPRDAV LRLIRSIKPD VFVHGISNGS  660
YNAPFFLTRF REALFHLSAI YDMLDATVPS DNDQRVVVER EFYGREIMNV VACEGLERIE  720
RPETYKQWQV RVARAGFTQL PLDQEVMEMA RTKMSRHYPK DFVLAEESKW MLLGWRGRII  780
SACTCWVPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-42	416	786	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043529.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043530.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043531.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043532.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724294.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059D475	0.0	A0A059D475_EUCGR; Uncharacterized protein
STRING	XP_010043529.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]