PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC000125.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 139aa MW: 16318.5 Da PI: 8.6773 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 48 | 101 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le++Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k EcC000125.10 48 KKRRLSADQVHFLERHFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARYK 101 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.1e-41 | 48 | 138 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls++qv++LE++Fe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEk+y++Lk+++++lk+++++L ke+e+L+ e++ EcC000125.10 48 KKRRLSADQVHFLERHFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARYKTKQLEKEYDSLKARFESLKADHDKLIKEKENLKGEVM 138 9*************************************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 39 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-19 | 45 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-15 | 46 | 104 | No hit | No description |
Pfam | PF00046 | 1.0E-16 | 48 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-20 | 50 | 111 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.8E-6 | 74 | 83 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 78 | 101 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-6 | 83 | 99 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.3E-13 | 103 | 139 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
SKSVVNFEDV CGGGDTNTAP RPYLRQIDLK EEAVEEDYCD GNFQPPGKKR RLSADQVHFL 60 ERHFEVENKL EPERKIQLAK DLGLQPRQVA IWFQNRRARY KTKQLEKEYD SLKARFESLK 120 ADHDKLIKEK ENLKGEVMK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | RRARYKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044703.1 | 1e-94 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Refseq | XP_010044704.1 | 1e-94 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | A2X980 | 3e-38 | HOX16_ORYSI; Homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q6YWR4 | 3e-38 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A059D8Q7 | 3e-93 | A0A059D8Q7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044703.1 | 6e-94 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 5e-40 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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