PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000110.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 281aa    MW: 30711.3 Da    PI: 7.137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000110.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20149200256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   +++GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g+
  EcC000110.10 149 HFRGVRQRP-WGKYAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAYRMRGA 200
                   69*******.***********9987..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31148208IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23149209IPR016177DNA-binding domain
PROSITE profilePS5103223.841149207IPR001471AP2/ERF domain
CDDcd000187.99E-29149208No hitNo description
PfamPF008475.9E-14149199IPR001471AP2/ERF domain
SMARTSM003801.9E-36149213IPR001471AP2/ERF domain
PRINTSPR003671.8E-10150161IPR001471AP2/ERF domain
PRINTSPR003671.8E-10173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSQSTMLVAE ETIFSPPPLY NQRNHPHDGA PGLNPFLTQE HWGDLPLQLN DSDDMLIYNS  60
LHDALHSGWS PFDSVITAVH PQPQPHPLLP AASVPTSFAS DDALSLHNAF ASYNYPIEVA  120
GGVVNSERRE SDFARDYGFH RSSFCKGRHF RGVRQRPWGK YAAEIRDPAK NGARVWLGTY  180
ETAEEAALAY DRAAYRMRGA KALLNFPHRI GSGEPAPVRV TAKRKDSEAK GAVAGSAKKP  240
KGTTTAPAAE ADGGAGLRRE GERLDAFQQG LLRLSEELLV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-37145214170ATERF1
3gcc_A5e-37145214170ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025350.10.0PREDICTED: ethylene-responsive transcription factor 2
TrEMBLA0A059DKG30.0A0A059DKG3_EUCGR; Uncharacterized protein
STRINGXP_010025350.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-41ethylene responsive element binding factor 1