PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000072.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 312aa    MW: 35088.1 Da    PI: 4.4235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000072.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79e-16119166253
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                    ykGVr+++ +g+++AeIrdp+    r  r++lg++ taeeAa a+ + ++++
  EcC000072.10 119 AYKGVRRRP-WGKFAAEIRDPT----RkVRVWLGTYSTAEEAALAYQKKKLEI 166
                   69*******.**********84....35******************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-3210279IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541714.38E-16118166IPR016177DNA-binding domain
CDDcd000186.09E-22118159No hitNo description
Gene3DG3DSA:3.30.730.103.8E-22119167IPR001471AP2/ERF domain
PROSITE profilePS5103218.452119176IPR001471AP2/ERF domain
PfamPF008472.6E-10119166IPR001471AP2/ERF domain
SMARTSM003801.1E-19119182IPR001471AP2/ERF domain
PRINTSPR003677.7E-10120131IPR001471AP2/ERF domain
PRINTSPR003677.7E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MPGVDSRFLN PNMSTERVLE KKTPGREDRR LIPMRKLRVT YCDPDMTDSS SDEDDTRCGL  60
RIAPRKKSVQ VVKEIVIPCA RHESCEGISP CLANNCQKCS ASGNDVLSEA SMRARGSSAY  120
KGVRRRPWGK FAAEIRDPTR KVRVWLGTYS TAEEAALAYQ KKKLEIDQQM ESRRKEEEVV  180
EEEGEENSIY DLKGETEDDR NDLFCHQSPS SVLDAHKSSS LGRGQDELVF PEQDQLIQAF  240
VDQAPSGSTS QELGLGCEGS FMLDNEFGSF FDGFDLTRDL FNDRGVYDLP DIDLDLGSEE  300
LAWIDEVIDM AC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15120161345ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036883.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
STRINGXP_010036883.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.14e-20ERF family protein