PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0729s00007.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family SBP
Protein Properties Length: 479aa    MW: 52188.5 Da    PI: 6.7834
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0729s00007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.54.9e-35354431178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqv gC  dl++ keyh+r+++Cevh k p+vl +g+ qrfCqqC+rfh+l  fD ++rsCr++L+khn+rrrk+++
  Dusal.0729s00007.1.p 354 VCQVAGCGRDLTSHKEYHHRYRICEVHIKLPQVLKDGRLQRFCQQCGRFHDLMAFDGSRRSCRDQLDKHNARRRKRAQ 431
                           6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-29348416IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.957352429IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.68E-31353429IPR004333Transcription factor, SBP-box
PfamPF031102.0E-30355428IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
SISHVRNEVI KGERMEHLDD GFDMFTGLDG DQLPSSAPPI PQQQKAQVMD PFLLAADEQT  60
WDLADWDWDP VNCVARRKGD GNGAQPSDVG TNVPMEGMQM SSLPAQQGSV GGGGSFPSRC  120
QFQLNQSSLP TTPGALDWSA LPPPVLPPWQ PPNQQGDLLS SQFSDFQDVP HMDLNIRGGL  180
LPTMPQPCYD PQHQLHHESP LPPLPPTAPA PPNACSHHAA LAACALRPPN RKRSNNAVGS  240
QATTDARQRQ RRIPCPLHTP PQQQHNLHLQ HLQHPQQQQQ QQQLQHTSYL PMDMSNLGWE  300
GGGLDAADKA AAAAVAAMGE MGQSQLPGLF PSGLEGVVSI SDPPPPDQSG NRMVCQVAGC  360
GRDLTSHKEY HHRYRICEVH IKLPQVLKDG RLQRFCQQCG RFHDLMAFDG SRRSCRDQLD  420
KHNARRRKRA QVDSQKTKAL EPKVPHAPSP SPNPQEDAAF AAASAVTAEP LLSQQVGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-22349428684squamosa promoter binding protein-like 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-24squamosa promoter binding protein-like 2