PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0539s00005.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family GATA
Protein Properties Length: 948aa    MW: 95245.4 Da    PI: 8.4408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0539s00005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.3e-15586620135
                  GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35 
                           C nCgt +Tp WR+++ dg++ LCnaCGly+ k+++
  Dusal.0539s00005.1.p 586 CKNCGTQNTPFWRKDKaDGKP-LCNACGLYFSKNES 620
                           ****************9****.**********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.71E-13577629No hitNo description
SMARTSM004011.3E-12580631IPR000679Zinc finger, GATA-type
PROSITE profilePS5011417.358580623IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-18580630IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.97E-16585632No hitNo description
PROSITE patternPS003440586611IPR000679Zinc finger, GATA-type
PfamPF003206.0E-12586619IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MWGGGGLSHS NLDPPPHSEQ AAADPTPRTR GEPTAQHLQT DSQQAVTLHG LQGPLTQQEP  60
QPAQQQVVVS SSTSCSIPAS QTAAGANADP DDVVTGVPVD EFAQQWQTMA VQQQAVMAWY  120
GQAWLAQMHQ GSFAQGGAAV PPQGMGMVAH HQVSQMYQQL MNSQQQMAAA IQQHHHSQQP  180
GPQMPPPSHL PLQSLEPQPT AHQPHLGSSY GHDPPHGVSS FGAAFPSGSG LPPLAPFSPI  240
PPASLPASIP PLTSSSISAG GPEGWGPLPA SCPFPLPQAH IHPASPLDMG LCSVPPAPWP  300
PPPPPPLDLS IPPDSDHHLS DPYQPFHNPA EQQQFYGAMG GEGMGMLGQC GMLDVVDATE  360
EGEEDLEEGD PAGGELGIAH SSGVSPASSS QQQQRPLQPS DKEDGGGAAE EAGRKRRRHQ  420
SSTGVGADAS AAARDSVGTW SGAGRRGERR AAAAAPVFEG GQLPAQSSSG GGGGGGSRVK  480
TEDGSVQQPP REGRGKPVGG SSAPAGRASG ATTSSARAAP VDVRTGGSGV QALKAGQLMA  540
SRDASASAAG GHGEGVGHVK RELSAPLQDP NAAKRGRRTT KESKVCKNCG TQNTPFWRKD  600
KADGKPLCNA CGLYFSKNES HRPKMLWKED ERLGIGGASG SPRAHASSGH VPAQHQHQPG  660
VPASGKGGPS SGPGPSSSAP RPGVLKMPPS AYLVGLPPLP PALANFLAAA VAASGAVPGS  720
PAAHAAAAAA ASAITKMPAA GGGRGGAGAG PAQPAGSAAA SGSAAASGGR RQTPPPPAAM  780
PPAPPALNPN RRPPAPPPVA MPPAQAPLAA PARFSRPPAP PPAIAMPPPP LAMPPPPAPI  840
SNPKPPANTT PPPALPIISP TSGLSMPFRP HPPAAVRRPP TSAIKPHADA ASPSPEPAAD  900
PPPAPPPPPP PPPPPLRHAA AAAAPAPHPP AGGSAKRSPD TSQRVRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413417RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-06GATA transcription factor 15