PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0426s00007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | LSD | ||||||||
Protein Properties | Length: 255aa MW: 26615.9 Da PI: 7.0871 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.6 | 4e-13 | 35 | 59 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+YP GA +VRC+ C ++ Dusal.0426s00007.1.p 35 CGGCHTLLMYPQGAGNVRCSRCTHI 59 **********************997 PP | |||||||
2 | zf-LSD1 | 43.1 | 7.1e-14 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lLsYP GA sV+C++C+ V Dusal.0426s00007.1.p 74 CNGCRVLLSYPKGAQSVQCSMCHVV 98 ***********************98 PP | |||||||
3 | zf-LSD1 | 45.5 | 1.2e-14 | 109 | 133 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC ++L+YP+GA sV+C++C++V Dusal.0426s00007.1.p 109 CGGCSIMLMYPTGAESVKCSVCHHV 133 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.5E-11 | 32 | 60 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 3.77E-6 | 34 | 131 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 4.9E-12 | 35 | 59 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.9E-13 | 71 | 101 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.2E-12 | 106 | 134 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-12 | 109 | 133 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSTPPHVNTS PPLPPMPIPL FIPPGGPKPH SHLECGGCHT LLMYPQGAGN VRCSRCTHIT 60 PVPHASTEAA QIVCNGCRVL LSYPKGAQSV QCSMCHVVTQ VPAYGHLVCG GCSIMLMYPT 120 GAESVKCSVC HHVTGVESVQ QQQQQQQQQQ QQQQQQQQPP PSDAPPPPSS SKEDKGGGSS 180 SAGPADAAPL QSLEGRVNAE GARAGAWHGM QQQEQQLPKE GIAGAGHREA GADKSQPQNS 240 TTGEVPNLEA SVKN* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-30 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0426s00007.1.p |