PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0407s00007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | YABBY | ||||||||
Protein Properties | Length: 212aa MW: 23403.3 Da PI: 5.3036 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 21 | 9.6e-07 | 85 | 139 | 111 | 165 |
YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + + + P+ +r say f ++ ika+nP++ e s k W +P+ Dusal.0407s00007.1.p 85 KGEKKKKDPNAPKRGLSAYMFFCQDMRDTIKAENPEMKVTEVTSELGKQWKELPE 139 23345788999999***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 2.09E-29 | 88 | 168 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-27 | 94 | 167 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 1.3E-27 | 95 | 165 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 5.3E-26 | 96 | 164 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 21.004 | 96 | 164 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 2.48E-25 | 96 | 161 | No hit | No description |
PRINTS | PR00886 | 4.1E-7 | 111 | 129 | No hit | No description |
PRINTS | PR00886 | 4.1E-7 | 129 | 148 | No hit | No description |
PRINTS | PR00886 | 4.1E-7 | 148 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MCAFMDTFAL CVVVQEAPDL QWVHIHLAER PPVAGLEGIA AGTNPRTYDP LAGQPLGTCL 60 QTGTLTNMPK AAATKKQAPK AKPEKGEKKK KDPNAPKRGL SAYMFFCQDM RDTIKAENPE 120 MKVTEVTSEL GKQWKELPES EKKQYHDRAA QDKKRYEEES KNYKPPAGEA SGKKATPKKA 180 PAKDKGKKRE ESPAADEGGE EEEEEEEEDD E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cg7_A | 9e-19 | 92 | 163 | 17 | 88 | PROTEIN (NON HISTONE PROTEIN 6 A) |
1j5n_A | 9e-19 | 92 | 163 | 17 | 88 | Nonhistone chromosomal protein 6A |
1lwm_A | 9e-19 | 92 | 163 | 17 | 88 | NONHISTONE CHROMOSOMAL PROTEIN 6A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A286U7Z8 | 6e-27 | A0A286U7Z8_9AGAM; HMG-box |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0407s00007.1.p |