PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0400s00013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | MYB | ||||||||
Protein Properties | Length: 122aa MW: 13992.9 Da PI: 10.9841 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.4e-16 | 4 | 48 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed +l ++v+++G++ W++Ia+++g + kq++ rw+++l Dusal.0400s00013.1.p 4 VWTEQEDAKLRELVAEYGSKKWSLIAQKLG-SKGSKQIRRRWNNVL 48 5*****************************.999*********986 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.7e-17 | 55 | 96 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g W+ eEd l+++++++G++ W++Ia+++g gRt++ +k+rw+ Dusal.0400s00013.1.p 55 GGWSLEEDRVLLEGHQKYGNK-WTKIAEMVG-GRTDNAVKNRWH 96 56*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-13 | 1 | 50 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.767 | 1 | 48 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-15 | 4 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.5E-28 | 4 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.53E-13 | 5 | 48 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 5 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.92 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 55 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 56 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-11 | 57 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MACVWTEQED AKLRELVAEY GSKKWSLIAQ KLGSKGSKQI RRRWNNVLNA DNKQGGWSLE 60 EDRVLLEGHQ KYGNKWTKIA EMVGGRTDNA VKNRWHALCK RGDQPPGSRR SRTKRVRHNH 120 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 5 | 101 | 10 | 106 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 114 | RSRTKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001699782.1 | 1e-42 | myb family transcription factor, partial | ||||
TrEMBL | A0A2K3E2F1 | 4e-44 | A0A2K3E2F1_CHLRE; Uncharacterized protein | ||||
STRING | EDP07478 | 4e-42 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.2 | 8e-32 | myb domain protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0400s00013.1.p |