PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0399s00006.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | NF-YC | ||||||||
Protein Properties | Length: 839aa MW: 85853.5 Da PI: 5.8364 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 40.3 | 6.9e-13 | 46 | 123 | 21 | 97 |
NF-YC 21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 Pl arikk+++adedv +is +P+ll++a elf+ +l + + a++ + +t+ s ++ v+ + dfl ++v Dusal.0399s00006.2.p 46 CPLaARIKKLMQADEDVGKISQATPTLLARAMELFLKKLVEGTCNVAQSRQAKTVSTSHLKHFVSMDKSTDFLKEKVA 123 57636********************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 4.5E-13 | 50 | 107 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.1E-15 | 50 | 126 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.8E-21 | 50 | 109 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MKSEDKVKAE EKVKAEDDAA LEREEEEARE QEGQLRPSLR QARKPCPLAA RIKKLMQADE 60 DVGKISQATP TLLARAMELF LKKLVEGTCN VAQSRQAKTV STSHLKHFVS MDKSTDFLKE 120 KVASAPDLGD APEAKPKRKR SSGLDKAGGA EGGEGPQEGG GEEGVGQPRK RGPRRSAAQK 180 AAEAEAEAEE AEALEGVMAS PTAAGSGGRG RKRGGCAEGG GRGGRKRKGA GAGAGEEQQQ 240 QHHQQLQQQQ QPMQGAALMS YERILAQVRE MAGPMGLQED QVHTMAAQMH AMQSNPELQQ 300 HLMQPSVDPQ LAALQPTPQL GQPQPQPQQL PFLPPLQLQQ QQQQQAQPQP QPQMPFLPQL 360 QLQQQQPHPQ LPFLLPQQLQ QQQHLQPQLP FLPPLQLQQQ QQPQLPFLPP LQLQQQQQPQ 420 LPFLPPLQLQ QQQAQQQQQQ SLDLAGHAQG GNDPAAAAAA AAAAAAVTGF PGGGGGNAAA 480 TAAAAVAGFQ GGAGDASAGG VPHIKAEGQG EQGARSIEGG GPSQEGGAGA HIKQEQGTTG 540 VLGMGGMSVP GDASGGGGMP SIVGLPPLSG FGGGGGDSGG LGGGGDGNMD DLFAAAAAAA 600 AAEISGNMAG QPQPQASVPP PFHPQPLLQQ QQQQQQPGAP SEPFSAPTIN MPSSGVGISN 660 SGSGQSRPGD SMGGAGSAFS KPGPSLSSAL RGSGHPLSLR PTHPMTLKKG SKGPGAKDKA 720 GQGGADGAQK QSQPQSLPPQ TAVTQPHNPD AASTIPPPES AINKDSFAPP EGVPTLAPAS 780 QPSSVRGEEE ASQPAAGGAP VSAEPLQAAP LGGGVPCVPV HLAHLGVGGA VEDDDYDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-18 | 50 | 112 | 15 | 77 | Transcription Regulator NC2 alpha chain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 227 | RKRGGCAEGGGRGGRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-21 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0399s00006.2.p |