PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dusal.0399s00006.1.p

Organism

Dunaliella salina

Taxonomic ID

3046

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

NF-YC

Protein Properties

Length: 856aa MW: 87857.8 Da PI: 6.0271

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0399s00006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.3	7.1e-13	63	140	21	97
NF-YC 21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 Pl arikk+++adedv +is +P+ll++a elf+ +l + + a++ + +t+ s ++ v+ + dfl ++v Dusal.0399s00006.1.p 63 CPLaARIKKLMQADEDVGKISQATPTLLARAMELFLKKLVEGTCNVAQSRQAKTVSTSHLKHFVSMDKSTDFLKEKVA 140 57636********************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	4.6E-13	67	124	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.14E-15	67	143	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.9E-21	67	126	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MQFSNKIFSH RQLSAVEMKS EDKVKAEEKV KAEDDAALER EEEEAREQEG QLRPSLRQAR 60 KPCPLAARIK KLMQADEDVG KISQATPTLL ARAMELFLKK LVEGTCNVAQ SRQAKTVSTS 120 HLKHFVSMDK STDFLKEKVA SAPDLGDAPE AKPKRKRSSG LDKAGGAEGG EGPQEGGGEE 180 GVGQPRKRGP RRSAAQKAAE AEAEAEEAEA LEGVMASPTA AGSGGRGRKR GGCAEGGGRG 240 GRKRKGAGAG AGEEQQQQHH QQLQQQQQPM QGAALMSYER ILAQVREMAG PMGLQEDQVH 300 TMAAQMHAMQ SNPELQQHLM QPSVDPQLAA LQPTPQLGQP QPQPQQLPFL PPLQLQQQQQ 360 QQAQPQPQPQ MPFLPQLQLQ QQQPHPQLPF LLPQQLQQQQ HLQPQLPFLP PLQLQQQQQP 420 QLPFLPPLQL QQQQQPQLPF LPPLQLQQQQ AQQQQQQSLD LAGHAQGGND PAAAAAAAAA 480 AAAVTGFPGG GGGNAAATAA AAVAGFQGGA GDASAGGVPH IKAEGQGEQG ARSIEGGGPS 540 QEGGAGAHIK QEQGTTGVLG MGGMSVPGDA SGGGGMPSIV GLPPLSGFGG GGGDSGGLGG 600 GGDGNMDDLF AAAAAAAAAE ISGNMAGQPQ PQASVPPPFH PQPLLQQQQQ QQQPGAPSEP 660 FSAPTINMPS SGVGISNSGS GQSRPGDSMG GAGSAFSKPG PSLSSALRGS GHPLSLRPTH 720 PMTLKKGSKG PGAKDKAGQG GADGAQKQSQ PQSLPPQTAV TQPHNPDAAS TIPPPESAIN 780 KDSFAPPEGV PTLAPASQPS SVRGEEEASQ PAAGGAPVSA EPLQAAPLGG GVPCVPVHLA 840 HLGVGGAVED DDYDS*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MQFSNKIFSH RQLSAVEMKS EDKVKAEEKV KAEDDAALER EEEEAREQEG QLRPSLRQAR  60
KPCPLAARIK KLMQADEDVG KISQATPTLL ARAMELFLKK LVEGTCNVAQ SRQAKTVSTS  120
HLKHFVSMDK STDFLKEKVA SAPDLGDAPE AKPKRKRSSG LDKAGGAEGG EGPQEGGGEE  180
GVGQPRKRGP RRSAAQKAAE AEAEAEEAEA LEGVMASPTA AGSGGRGRKR GGCAEGGGRG  240
GRKRKGAGAG AGEEQQQQHH QQLQQQQQPM QGAALMSYER ILAQVREMAG PMGLQEDQVH  300
TMAAQMHAMQ SNPELQQHLM QPSVDPQLAA LQPTPQLGQP QPQPQQLPFL PPLQLQQQQQ  360
QQAQPQPQPQ MPFLPQLQLQ QQQPHPQLPF LLPQQLQQQQ HLQPQLPFLP PLQLQQQQQP  420
QLPFLPPLQL QQQQQPQLPF LPPLQLQQQQ AQQQQQQSLD LAGHAQGGND PAAAAAAAAA  480
AAAVTGFPGG GGGNAAATAA AAVAGFQGGA GDASAGGVPH IKAEGQGEQG ARSIEGGGPS  540
QEGGAGAHIK QEQGTTGVLG MGGMSVPGDA SGGGGMPSIV GLPPLSGFGG GGGDSGGLGG  600
GGDGNMDDLF AAAAAAAAAE ISGNMAGQPQ PQASVPPPFH PQPLLQQQQQ QQQPGAPSEP  660
FSAPTINMPS SGVGISNSGS GQSRPGDSMG GAGSAFSKPG PSLSSALRGS GHPLSLRPTH  720
PMTLKKGSKG PGAKDKAGQG GADGAQKQSQ PQSLPPQTAV TQPHNPDAAS TIPPPESAIN  780
KDSFAPPEGV PTLAPASQPS SVRGEEEASQ PAAGGAPVSA EPLQAAPLGG GVPCVPVHLA  840
HLGVGGAVED DDYDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-18	67	129	15	77	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	244	RKRGGCAEGGGRGGRKRK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3343	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-21	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Dusal.0399s00006.1.p