PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0303s00007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | NF-YC | ||||||||
Protein Properties | Length: 206aa MW: 22384.3 Da PI: 5.2582 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 152.5 | 8e-48 | 6 | 113 | 2 | 101 |
NF-YC 2 lksfwekq.......iekatdf.knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 l+ f+ +q +++df knh+lPlarikki+k+dedv+misaeaPvl++kace+fileltl++w haeenkrrtl+++d++aa Dusal.0303s00007.1.p 6 LQEFFDDQlrevqqhSLDVADFtKNHQLPLARIKKIMKSDEDVRMISAEAPVLFAKACEIFILELTLKAWRHAEENKRRTLQRNDVSAA 94 566666664433222223456536***************************************************************** PP NF-YC 83 vtrtdifdflvdivprdel 101 ++rtdifdfl+d+vp+++l Dusal.0303s00007.1.p 95 IARTDIFDFLLDVVPKEDL 113 ****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.05E-30 | 14 | 104 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.7E-23 | 32 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.9E-37 | 33 | 110 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSEHQLQEFF DDQLREVQQH SLDVADFTKN HQLPLARIKK IMKSDEDVRM ISAEAPVLFA 60 KACEIFILEL TLKAWRHAEE NKRRTLQRND VSAAIARTDI FDFLLDVVPK EDLTGAPEGG 120 QGAGSSHPMP QGAPQQTPMG PSVGQAGMPA LGPQGGGMLP AGMFPFPFSM PPGSEALLQE 180 GTLHRYTSHN QVPEPGTSSN PPDPH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-47 | 13 | 110 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 88 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022729999.1 | 2e-52 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 6e-52 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A444XLM1 | 4e-52 | A0A444XLM1_ARAHY; Uncharacterized protein | ||||
STRING | Lus10016750 | 8e-52 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2195 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-54 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0303s00007.1.p |
Publications ? help Back to Top | |||
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