PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0278s00002.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB
Protein Properties Length: 949aa    MW: 105904 Da    PI: 7.8263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0278s00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-121053448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
  Dusal.0278s00002.1.p 10 WKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWFEWL 53
                          9999*************************.***********9986 PP
2Myb_DNA-binding31.83.2e-1060102247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+  +
  Dusal.0278s00002.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLDRYERL 102
                           68*****************99.********8..*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.189253IPR017930Myb domain
SMARTSM007175.0E-13655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-18960IPR009057Homeodomain-like
CDDcd001671.06E-101053No hitNo description
PfamPF139211.9E-121070No hitNo description
SuperFamilySSF466895.03E-2133111IPR009057Homeodomain-like
PROSITE profilePS5129420.67354107IPR017930Myb domain
CDDcd116595.59E-3155107No hitNo description
SMARTSM007171.6E-1258105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-1461104IPR009057Homeodomain-like
PfamPF118318.6E-11376477IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
PfamPF118312.8E-8557630IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MRIQIKGGIW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWF EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLDRYE RLLDMAVSKE DKYDPADDPR  120
RLRPGEIDPN PESKPARPDA VDMDEEEKEM LSEARARLAN TQHGRTSQKR QHKWECQTKR  180
KRTINYNAEV AFERKPAAGF FETAEEEARS KALQQPSDSC LATGPCIIII IITITNHAAG  240
EEWKGKVDEL LMSFIVASSC NGACHLSTDI NCANMSNVAQ HLFAAPEAAA KLAELNDPVM  300
VRRRGKMMLP TPQVSETELE QIARMSTEQL LEDGVTEGAG GDATRHLLGQ YGPTPLRAAS  360
TAATPARTAP HGDRIQQEAQ NLMRLTALQR GLPRPLTLDL LPHGRPAHEQ PKLSLRERAE  420
DMLKEEMLTV LAHDASKYPI VIKEGKKVGR QAGEGGESAV FIVNIRKRAE DMLKEEMFTR  480
LAHEVSKNPV IMKEGEKGCG RARSYVLKEE MLTVLAHHAS KHPILTKEGK KGMLEVEMLT  540
VLARDASQYP IVIKEGKKVN EEVHTVLAHD ACEYPIVIKE SKKAKHAALA AAAAAPPLEE  600
LEASALEAAA AMLRAETEFV VGAMGHASTP LNCCFALFKD SCLQVLPYCY AILISCIHAA  660
CSPSPGDHCT FIELLLLTCF QTTPMPSSSR HLRARNLCST PPDDYIATWD TVRKDLMWVP  720
GKQKADRVAS STPGERIEAT KVGLDPSPVR MSGLVVGLGV SSGGQIDCGG NNPKFKKFAL  780
ILWVLKFFDL KNWLVMFVQA QCELCYVLRP SWCMLQPKRA NACCIYFCML FQHSHAFEAA  840
RGEMEREAKR AAKIEQKVGI LVNGLQQRDA RLREQADRAW AALQQELVNL ACFQALYERE  900
KLAAPDRIEQ MLHLVSEQRE REKALQERCG SLMADHMELS NALSKIDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-10023963387Cell division cycle 5-like protein
5xjc_L1e-10023963387Cell division cycle 5-like protein
5yzg_L1e-10023963387Cell division cycle 5-like protein
5z56_L1e-10023963387Cell division cycle 5-like protein
5z57_L1e-10023963387Cell division cycle 5-like protein
5z58_L1e-10023963387Cell division cycle 5-like protein
6ff4_L1e-10023963387Cell division cycle 5-like protein
6ff7_L1e-10023963387Cell division cycle 5-like protein
6icz_L1e-10023963387Cell division cycle 5-like protein
6id0_L1e-10023963387Cell division cycle 5-like protein
6id1_L1e-10023963387Cell division cycle 5-like protein
6qdv_O1e-10023963387Cell division cycle 5-like protein
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.15e-99cell division cycle 5