PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0257s00027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | Whirly | ||||||||
Protein Properties | Length: 232aa MW: 25126.5 Da PI: 9.6713 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 87 | 2.3e-27 | 57 | 202 | 2 | 135 |
Whirly 2 vyktkaalkvkavrptfealdsgn....lklkraGglllelan.........ataerkydWekkqsfalsatevaelvdlaskesceff 77 vyk+k+a+++++++pt+e + s++ + +kr+G llle+an + ++r+ydW++k + +l +te+a+l +l +++ ++ Dusal.0257s00027.1.p 57 VYKGKGAMSMQPIAPTWEGVVSQKgnaiQNVKRPGVLLLEFANvlgstgaqtSFGNRNYDWGNKLTISLNVTELAQLSELPVNGTMMLY 145 9***************998876542233479***********94443333334578********************************* PP Whirly 78 hdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlr 135 hdp +++ +e + +k l++ P p G f+ +s++ +g++++svPv+ e+ vlr Dusal.0257s00027.1.p 146 HDPDKNTPQENTRGKKLQISPTPQADGSFF-FSISGRGANGQQQVSVPVAPPEMKVLR 202 ********************9998887665.34445556**************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.3E-41 | 44 | 224 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.04E-23 | 50 | 223 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-30 | 57 | 202 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MQQLMRSCVG LRSATSGISR PAATSVSLHS SHRRSLTTQA AADSSYMPSR SYANYCVYKG 60 KGAMSMQPIA PTWEGVVSQK GNAIQNVKRP GVLLLEFANV LGSTGAQTSF GNRNYDWGNK 120 LTISLNVTEL AQLSELPVNG TMMLYHDPDK NTPQENTRGK KLQISPTPQA DGSFFFSISG 180 RGANGQQQVS VPVAPPEMKV LRCSAEFLIP RLMGFDEMLF STSQQAQPME Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 2e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 2e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 2e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 2e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 9e-25 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0257s00027.1.p |