PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dusal.0256s00006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 232aa MW: 25075.4 Da PI: 9.8585 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 86.7 | 2.9e-27 | 56 | 202 | 1 | 135 |
Whirly 1 svyktkaalkvkavrptfealdsgn....lklkraGglllelan.........ataerkydWekkqsfalsatevaelvdlaskescef 76 svyk+k+a++++++ pt+e + s++ + +kr+G llle+an + ++r+ydW++k + +l +te+a+l +l +++ Dusal.0256s00006.1.p 56 SVYKGKGAMSMQPIVPTWEGVISQKgnaiQNVKRPGVLLLEFANvlgstgaqtSFGNRNYDWGNKLTISLNVTELAQLSELPVNGTMMV 144 79****************98766432223479***********94443333334578******************************** PP Whirly 77 fhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlr 135 +hdp +++ +e + +k l++ P p G f+ +s++ +g++++svPv+ e+ vlr Dusal.0256s00006.1.p 145 YHDPDKNTPQENTRGKKLQISPTPQADGSFF-FSISGRGANGQQQVSVPVAPPEMKVLR 202 *********************9998887665.34445556**************99997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 7.8E-41 | 44 | 224 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.9E-24 | 50 | 223 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.8E-30 | 57 | 202 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MQQLMRSCGG LRSATSGISR PAATSVSLHS SHRRSLATHA AADSSYMPSR SYANYSVYKG 60 KGAMSMQPIV PTWEGVISQK GNAIQNVKRP GVLLLEFANV LGSTGAQTSF GNRNYDWGNK 120 LTISLNVTEL AQLSELPVNG TMMVYHDPDK NTPQENTRGK KLQISPTPQA DGSFFFSISG 180 RGANGQQQVS VPVAPPEMKV LRCSAEFLIP RLMGFDEMLF STSQQAQPME Q* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 6e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 6e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 6e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 6e-24 | 47 | 230 | 5 | 174 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14410.1 | 3e-24 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Dusal.0256s00006.1.p |