PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dusal.0228s00018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 229aa MW: 25156.4 Da PI: 8.9626 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.4 | 1.1e-33 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+ye+++d+++++++ w + + sfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+ Dusal.0228s00018.1.p 25 FLTKTYELVDDPSTNSVVPWGSGNASFVVWKPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVNPDS---------WEFANDHFIRGR 104 9****************************************************************998.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 ++ll+ i+r+k Dusal.0228s00018.1.p 105 RDLLRXIHRRKP 116 *********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.3E-57 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-36 | 21 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-34 | 21 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.5E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-29 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MTNRHNGHYY QDGPSGVAGG GVPPFLTKTY ELVDDPSTNS VVPWGSGNAS FVVWKPPEFA 60 RDLLPKHFKH NNFSSFVRQL NTYGFRKVNP DSWEFANDHF IRGRRDLLRX IHRRKPASTG 120 GAHAGSIPPP TMMPPGQTAI EEGGKALFSS SPPTPPHLWY EALQMQSLFD LHALIYMPFL 180 RLAPTNLWHK PSICSLYLTL LMVLQGTAEA SSSPPPPVAG IPEDAALV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-25 | 13 | 114 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-25 | 13 | 114 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-25 | 13 | 114 | 17 | 129 | Heat shock factor protein 1 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP522 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32330.1 | 9e-47 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
---|---|
Phytozome | Dusal.0228s00018.1.p |