PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dusal.0223s00024.1.p

Organism

Dunaliella salina

Taxonomic ID

3046

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

MYB

Protein Properties

Length: 1045aa MW: 110948 Da PI: 9.3376

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0223s00024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.9e-08	10	64	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg......kgRtlkqcksrwqkyl 48 +g W eEde l +v +lG + W+tIa + Rt+kqc++r+ +l Dusal.0223s00024.1.p 10 KGQWRIEEDETLCSVVSRLGLDaPWATIAVIYNqetqsgAARTGKQCRERYMHHL 64 789***************99*************99********9875 PP
2	Myb_DNA-binding	55.1	1.7e-17	71	114	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+ Ed+l+v+++k++G++ Wk Iar ++ gRt+ +k++w++ Dusal.0223s00024.1.p 71 DPWTQAEDLLIVKGHKEHGNK-WKEIARLLP-GRTESAIKNHWNST 114 69*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	9.407	5	64	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.2E-8	5	71	IPR009057	Homeodomain-like
SMART	SM00717	0.0015	9	66	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-7	10	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-15	11	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.58E-24	50	120	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.189	65	119	IPR017930	Myb domain
SMART	SM00717	1.1E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	9.4E-15	71	114	IPR001005	SANT/Myb domain
CDD	cd00167	8.55E-13	72	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-20	72	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MESPSPSFAK GQWRIEEDET LCSVVSRLGL DAPWATIAVI YNQETQSGAA RTGKQCRERY 60 MHHLHPDVRH DPWTQAEDLL IVKGHKEHGN KWKEIARLLP GRTESAIKNH WNSTLRQKTH 120 PHRLSVLKQY INGLSSQQSP VANARHGGKG ARVASVECPS ETDAASLDGR APSHTPAPSS 180 RKARGAQPLT PRRTAGHAFS SKGARVASVE CPSESHGASQ DSLTPSHTPR PSSRQARPTG 240 HASRAATSPD AGSQGWAKWA QQEAALDAGG AALVTPGQQP PVVLSMEGRQ PQSHNPHLIP 300 PLGPLLQPQA QTQQQQLQLQ ADSNPLHLQQ HHLQLLQLLQ QLPEQQLAQA SLTVADSELP 360 AGLQPTNVHS GLYSSGSSTR GFKESQEGLP PGVPADQAGG GSMSLLTHHP ELLVEAGSYA 420 TACHGSDMLC AAHSRDAAAA VSVGRSNTAP APRVVGTGAA ASVCAQPPGT QEPAKEEAPG 480 EQQQPQQQAS KSLQVQQEQQ PQQQQQPHVG SVFSPAPDML QTLSAAAGLD KACSVQEKGP 540 RQAGTDVGHR QSAMPGHLEG VRMIGPGSTP SAKAAAPEGG AGPRIRTAQE GPCKGGPVLL 600 GAHSQHSQHS HSQHSHERGG PVLLGAYFGS QLHAQLQPLA PPPLPSMPNR SAALPPPPLP 660 PHDTHPTAPA VSSQSHLSQS NHSHASMLPH ARLLPGCAPA AHAPLQHHPS RPLLHGHHHL 720 HQHHLRQLLH NTALSSAALG RSESNRAHSA GTTGAARPIS SAAAAAAAPG TNGNKGTLPH 780 SGPARAPLEQ QSTPLVPGLQ QQLLQQMGLL HTAKKHPTQD QLQQQQQVLL TGAEHQQYQQ 840 QQQQHHYHHQ QQQRHHQQQQ RQRRRQLRGC LSDQLCLPLW GGLGERSRLP QKPLRAAPRQ 900 WSGLWWPEPN TLGVHEGVNK RSRDETDVQE FAGPVWKPSG AGLGDGACSR GGSLLPTNML 960 RGGQSAWAPE KDVQGGMQGA GRERQQPPAQ QHSQQQPPQC PSLAVGGAGS PRAGEGKRGE 1020 DAPLPLLLHA AERMGADGPP VSSGC

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MESPSPSFAK GQWRIEEDET LCSVVSRLGL DAPWATIAVI YNQETQSGAA RTGKQCRERY  60
MHHLHPDVRH DPWTQAEDLL IVKGHKEHGN KWKEIARLLP GRTESAIKNH WNSTLRQKTH  120
PHRLSVLKQY INGLSSQQSP VANARHGGKG ARVASVECPS ETDAASLDGR APSHTPAPSS  180
RKARGAQPLT PRRTAGHAFS SKGARVASVE CPSESHGASQ DSLTPSHTPR PSSRQARPTG  240
HASRAATSPD AGSQGWAKWA QQEAALDAGG AALVTPGQQP PVVLSMEGRQ PQSHNPHLIP  300
PLGPLLQPQA QTQQQQLQLQ ADSNPLHLQQ HHLQLLQLLQ QLPEQQLAQA SLTVADSELP  360
AGLQPTNVHS GLYSSGSSTR GFKESQEGLP PGVPADQAGG GSMSLLTHHP ELLVEAGSYA  420
TACHGSDMLC AAHSRDAAAA VSVGRSNTAP APRVVGTGAA ASVCAQPPGT QEPAKEEAPG  480
EQQQPQQQAS KSLQVQQEQQ PQQQQQPHVG SVFSPAPDML QTLSAAAGLD KACSVQEKGP  540
RQAGTDVGHR QSAMPGHLEG VRMIGPGSTP SAKAAAPEGG AGPRIRTAQE GPCKGGPVLL  600
GAHSQHSQHS HSQHSHERGG PVLLGAYFGS QLHAQLQPLA PPPLPSMPNR SAALPPPPLP  660
PHDTHPTAPA VSSQSHLSQS NHSHASMLPH ARLLPGCAPA AHAPLQHHPS RPLLHGHHHL  720
HQHHLRQLLH NTALSSAALG RSESNRAHSA GTTGAARPIS SAAAAAAAPG TNGNKGTLPH  780
SGPARAPLEQ QSTPLVPGLQ QQLLQQMGLL HTAKKHPTQD QLQQQQQVLL TGAEHQQYQQ  840
QQQQHHYHHQ QQQRHHQQQQ RQRRRQLRGC LSDQLCLPLW GGLGERSRLP QKPLRAAPRQ  900
WSGLWWPEPN TLGVHEGVNK RSRDETDVQE FAGPVWKPSG AGLGDGACSR GGSLLPTNML  960
RGGQSAWAPE KDVQGGMQGA GRERQQPPAQ QHSQQQPPQC PSLAVGGAGS PRAGEGKRGE  1020
DAPLPLLLHA AERMGADGPP VSSGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-27	6	118	3	107	B-MYB
1h88_C	3e-27	5	118	53	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-27	5	118	53	158	MYB PROTO-ONCOGENE PROTEIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	3e-31	myb domain protein 3r-3

Link Out ? help Back to Top
Phytozome	Dusal.0223s00024.1.p