PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0158s00024.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB
Protein Properties Length: 186aa    MW: 21541.9 Da    PI: 9.4619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0158s00024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-133786146
                          TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                          r +W++ E+++l+++++q        +W++I++ +g  Rt kqc+++w++
  Dusal.0158s00024.1.p 37 RTAWSASEEQRLIQLCQQCQQQqqrmCWSLISQQLGSDRTSKQCREHWLN 86
                          679*****************99**************99**********98 PP
2Myb_DNA-binding25.72.7e-0894136145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           +g+W  +E+  +++ + + G++ W  Ia++++ gRt++++k++++
  Dusal.0158s00024.1.p  94 KGSWDIQEEYVIAKEHSRVGSH-WCIIAKKLP-GRTDNSIKNFFN 136
                           799*******************.*********.*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1613292IPR017930Myb domain
SuperFamilySSF466899.38E-2234135IPR009057Homeodomain-like
SMARTSM007173.7E-103690IPR001005SANT/Myb domain
CDDcd001671.20E-43988No hitNo description
Gene3DG3DSA:1.10.10.601.7E-163994IPR009057Homeodomain-like
PfamPF139211.6E-1440101No hitNo description
PROSITE profilePS5129410.72993143IPR017930Myb domain
SMARTSM007171.1E-693141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-1695142IPR009057Homeodomain-like
CDDcd001670.0011196136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDSEADTQSG EEKEERVRRG GNTSFQGRTT PAQRSRRTAW SASEEQRLIQ LCQQCQQQQQ  60
RMCWSLISQQ LGSDRTSKQC REHWLNSLAP NMKKGSWDIQ EEYVIAKEHS RVGSHWCIIA  120
KKLPGRTDNS IKNFFNATIR SKAVQKNQSI LVCCFSHTHT HTHTHTHTHT HTHTHTHTHT  180
LQLYNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25371434105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-243714358159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-243714358159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-25371434105C-Myb DNA-Binding Domain
1msf_C5e-25371434105C-Myb DNA-Binding Domain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-22myb domain protein 46