PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0104s00019.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family B3
Protein Properties Length: 525aa    MW: 53313.4 Da    PI: 4.8877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0104s00019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-1333130197
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k lt sd++ sgr+v+pk  ae++   ++++++  ++  d++g ++++k+++  +++s++y+l+ G  e  ++ ++ +gD++vF   
  Dusal.0104s00019.1.p  33 FEKPLTASDTSGSGRVVIPKAIAEQYfpRLDQPSGLPVRAVDTRGHEYTFKFRFwiNNQSRMYLLE-GAGELHRQFNMVVGDVMVFA-- 118
                           99**************************777778889***************99666666667666.********************.. PP

                           SSSEE..EEEEE CS
                    B3  86 grsefelvvkvf 97 
                           ++ +++lvv  +
  Dusal.0104s00019.1.p 119 QKPDRTLVVAGR 130
                           558888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-1730127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-2230131IPR015300DNA-binding pseudobarrel domain
CDDcd100178.04E-1732127No hitNo description
SMARTSM010191.5E-1033133IPR003340B3 DNA binding domain
PfamPF023623.7E-1033128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSTSLDVAPE ENERRATTIL QQVQSDLGAT VFFEKPLTAS DTSGSGRVVI PKAIAEQYFP  60
RLDQPSGLPV RAVDTRGHEY TFKFRFWINN QSRMYLLEGA GELHRQFNMV VGDVMVFAQK  120
PDRTLVVAGR PATKNDVIRK APVKRPAGEP KEKSKPGGRE PRVKQPKQQA SAAAAPQRKK  180
AKPNEQYVAP PLELEPAVDG IFRAVPDSAV STEASGVAPG LKGRWVVTLN LAGELYQALF  240
DTQEDAEEAF NAAGGIADGL PGALGTTSQA AAQQQLLSSQ PGQLPQLTDL GGGGDTRCLH  300
TEVPLAGPNL GQPQQQQQPH MKQEQPLQPM MQGAPESIGA GALGGSGPSG DQQGMQQAQP  360
QPQQQPQSEL SPPNTASAPA QEAATAPAPP LSSWEPAPAA APTAAAANGG TVGGSAEGPL  420
PAPAGTLAPA SAPGQASGQV QEGGSAVGGL VPMEGATGVA PGQSGLQGSV EVGGPASKGE  480
GVQGGQKQAE IEVGVAQGGG GGTAGSGSLP QGAGGDGGHV FLNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-24201329124B3 domain-containing transcription repressor VAL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.12e-24high-level expression of sugar-inducible gene 2