PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0052s00008.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C2H2
Protein Properties Length: 376aa    MW: 39761.6 Da    PI: 9.7158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0052s00008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-051334323
                          ETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                          C +C++ F++  +L++H++  H
  Dusal.0052s00008.1.p 13 CYYCDRKFKDEQTLVQHQKAaH 34
                          99****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2451134IPR007087Zinc finger, C2H2
SMARTSM003550.341134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.90.10.104.0E-51269No hitNo description
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.193558IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6633558IPR007087Zinc finger, C2H2
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVRKKKNEQL IFCYYCDRKF KDEQTLVQHQ KAAHFKCPEC HRKLNTSQGL ATHCYQVHKT  60
SLKQVPKAKE GRDSMEIEIF GMSGVPPGLM PGTASLGEND DETPAKKPKM ESVPVVSLTG  120
APVAPSPTPP PPVPSSYGMP GPPPPMMGMP PPRPSMPPMP GYGFPPFSGP MMPPPFGFPP  180
GGPPRPPGMM PPPHPSMMMP PGMRPPPPFP GMPPPMPGMP PPPGMPPFPP MPGMPPASMP  240
PPQPSSMPTS EAPQPPQSMP MPAPGMPPPS MPPPGMPPPL FPISSQPQPQ PLFPVAPGGP  300
SQPAAPPAGA PQGTPAPAAA APAPAAAAAP QDGIVWKDEE FSIEERRAQH PKYSGQVRRV  360
VQLRMSTGRR HYVEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.12e-37C2H2 family protein