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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0026s00012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 20854.5 Da PI: 9.4024 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++ +++G+g+W+ Iart+ +Rt+ q+ s+ qky Dusal.0026s00012.1.p 120 PWTEEEHKLFLQGLTKFGKGDWRNIARTFVMTRTPTQVASHAQKY 164 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.054 | 1 | 39 | IPR017877 | Myb-like domain |
SMART | SM00717 | 36 | 2 | 53 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.249 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.53E-18 | 115 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-18 | 116 | 167 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-11 | 117 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-12 | 117 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-13 | 120 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.29E-10 | 120 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MKGSNWTFAD SKALEVSLTA HYSKPDRWEH VQTCLPDKSF EDMEAYLHQL EDDIKSIEDG 60 TTPLPPYAPL PHPPQSIKDE SAAAQRLLPA PKKSKTDCTG GSSSAAAAAA AAADRKKGVP 120 WTEEEHKLFL QGLTKFGKGD WRNIARTFVM TRTPTQVASH AQKYFIRLNS QNNKKDKRRA 180 SIHDITH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8S9H7 | 7e-49 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2J8AF07 | 2e-53 | A0A2J8AF07_9CHLO; Transcription factor DIVARICATA | ||||
STRING | XP_002954068.1 | 6e-50 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-46 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0026s00012.1.p |
Publications ? help Back to Top | |||
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