PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0007s00046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | CO-like | ||||||||
Protein Properties | Length: 450aa MW: 47985 Da PI: 6.0751 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.6 | 3.9e-06 | 3 | 33 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C + ++ +C++++ +lC C +++H Dusal.0007s00046.1.p 3 SCLVCAAP-ASVYCQQDNAFLCTGCDVSIHTA 33 69999966.*********************54 PP | |||||||
2 | zf-B_box | 22.3 | 2.8e-07 | 43 | 85 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41 ++C++++++ ++ +C+++ +lC C e H++ H +++ Dusal.0007s00046.1.p 43 LPCCALCHRQVASVWCKEDAAHLCSVCDGEVHSSnpipHARES 85 689*****************************77888887665 PP | |||||||
3 | CCT | 64.4 | 3.4e-22 | 372 | 415 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+++ RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF++++ Dusal.0007s00046.1.p 372 REQRVARYREKRKSRKFEKTIRYASRKAYAEVRPRIKGRFATRE 415 9****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.1E-5 | 1 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.82E-4 | 4 | 44 | No hit | No description |
PROSITE profile | PS50119 | 8.958 | 41 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00111 | 46 | 75 | No hit | No description |
SMART | SM00336 | 0.66 | 46 | 86 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.003 | 372 | 414 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.1E-17 | 372 | 414 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MASCLVCAAP ASVYCQQDNA FLCTGCDVSI HTANALSKMH IRLPCCALCH RQVASVWCKE 60 DAAHLCSVCD GEVHSSNPIP HARESVKPIS SPHVTASACP TPCAMSGAQG AAPAVPQMED 120 SNSACGFHAA HSPPPACELG VQGKEGSCEV RSVAVVPEMP APLEEADTGA TAGAGEVFLP 180 KAPSLPKGFD FLDLDNSWLD RLDTGFDFSD IFNAAPDAPP TDGLVPTLSD NRNGNSPQED 240 LLNSNGNAAA VHSAHEEHDL LVPSFSLSLP DELPLPQLGG GAPKRPAEDA TDALLPASKQ 300 QRPSSYSMSA QQSAPFQLKQ ESQVPAPMMA APQWQAAPAP ALAPPPPPHR QPVHTTTTHH 360 APGYGAGAEL TREQRVARYR EKRKSRKFEK TIRYASRKAY AEVRPRIKGR FATREEVIAL 420 RAQKEQQEQQ QQLQLQAMLD EDCVVPNFA* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP611 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 4e-20 | CONSTANS-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0007s00046.1.p |