PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do030125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 107aa MW: 12087.9 Da PI: 9.3665 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.1 | 2.5e-32 | 1 | 94 | 8 | 101 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lrr+Ca+dCvla yfp +qp+++a vh +FG+sn++++l++lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ +++ela+++++l Do030125.1 1 LRRRCAPDCVLALYFPPSQPRRYADVHAVFGTSNITRVLQSLPVQERGRAADTMATEAHWRMQDPVYGCTGVIDRLQQEIHAVQHELAKTRAQL 94 69***************************************************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.26 | 1 | 94 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-32 | 1 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 107 aa Download sequence Send to blast |
LRRRCAPDCV LALYFPPSQP RRYADVHAVF GTSNITRVLQ SLPVQERGRA ADTMATEAHW 60 RMQDPVYGCT GVIDRLQQEI HAVQHELAKT RAQLAVHVQG TVLLQRT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-31 | 1 | 102 | 18 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-31 | 1 | 102 | 18 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do030125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 4e-58 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A1E5W8H4 | 5e-73 | A0A1E5W8H4_9POAL; LOB domain-containing protein 24 (Fragment) | ||||
STRING | Si015521m | 4e-57 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-34 | LOB domain-containing protein 24 |