PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do030064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 132aa MW: 15026.2 Da PI: 5.1641 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 103.2 | 3.7e-32 | 2 | 125 | 101 | 222 |
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I +a++g ++vHi+D++ +G+QWp+Ll ++a+ ++pp+++iT+++ p++ ++e+tg+rL++fA+++gvpf+f+ ++ ++e++ +++L++ Do030064.1 2 TIFKATAGRKKVHIVDYSDHYGFQWPTLLGSFATHWeGEPPEVKITVISLPQPWfcPGAQIEQTGRRLSNFARRCGVPFKFRS-IVAKWETICVDDLDI 99 6999*****************************88757799***********9999***************************.6999*********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsles 222 +p+E l+Vn+ ++ +l+de +++s Do030064.1 100 EPDELLIVNSLFHFGKLMDEGDDIDS 125 ******************99888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.927 | 1 | 132 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-29 | 2 | 125 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MTIFKATAGR KKVHIVDYSD HYGFQWPTLL GSFATHWEGE PPEVKITVIS LPQPWFCPGA 60 QIEQTGRRLS NFARRCGVPF KFRSIVAKWE TICVDDLDIE PDELLIVNSL FHFGKLMDEG 120 DDIDSQALGI WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-17 | 2 | 130 | 100 | 228 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do030064.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450068.2 | 9e-57 | scarecrow-like protein 14 | ||||
TrEMBL | A0A1E5WM25 | 6e-94 | A0A1E5WM25_9POAL; Uncharacterized protein | ||||
STRING | Sb05g027783.1 | 3e-56 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 3e-26 | SCARECROW-like 14 |