PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do030049.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 375aa    MW: 40521 Da    PI: 6.5665
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do030049.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS225.62.3e-69463751262
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lL++cA  v++g + +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +     aa++ ++++ P++k+s+lt+
  Do030049.1  46 LINLLYQCAAEVAAGAFDRANYYLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-AEAHLIPAARRHLFDMLPFMKLSYLTT 143
                 6799*******************************99**************************99777776.345555578888*************** PP

        GRAS  99 NqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                 N+aIlea+ege+ vH++D++  + + +QW+aL++a+ +R++gpp+lR+T+v++    ske l +++  Lak Ae++++pf+f++ v+ rl+dl++++L 
  Do030049.1 144 NHAILEAMEGEKFVHVVDLSgpAANTVQWIALFHAFRARRGGPPHLRVTAVHD----SKEFLANMAGVLAKEAEAFDIPFQFSA-VEARLDDLDPDALr 237
                 *******************9667899***************************....9**************************.799*******9996 PP

        GRAS 195 ...rvkpgEalaVnlvlqlhrll...................................................................desvslese 223
                    rv++gEala+++v qlhrll                                                                   +++ + + +
  Do030049.1 238 hvlRVRSGEALAISVVGQLHRLLaaddagrrhvpgstcltplqiiarsspssfgellerelntrlqlspgdsssvvsslspqspvlqasqAQQRPAAAK 336
                 6667888********************************************************************************999666666667 PP

        GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                   ++L++ + lsPk++vv+e ea+hn+++Flerf eal+
  Do030049.1 337 LGSFLQAARALSPKIMVVAEPEANHNAATFLERFDEALN 375
                 9***********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.41820375IPR005202Transcription factor GRAS
PfamPF035148.1E-6746375IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDIFPEDTVS SATSSPGSSL YSPSPHPHGY GAWVQELSHD QQGVRLINLL YQCAAEVAAG  60
AFDRANYYLE QITQLASLDA PHTLQRLAAV FADALARKLL NLVPGLSRAL LSTANSAEAH  120
LIPAARRHLF DMLPFMKLSY LTTNHAILEA MEGEKFVHVV DLSGPAANTV QWIALFHAFR  180
ARRGGPPHLR VTAVHDSKEF LANMAGVLAK EAEAFDIPFQ FSAVEARLDD LDPDALRHVL  240
RVRSGEALAI SVVGQLHRLL AADDAGRRHV PGSTCLTPLQ IIARSSPSSF GELLERELNT  300
RLQLSPGDSS SVVSSLSPQS PVLQASQAQQ RPAAAKLGSF LQAARALSPK IMVVAEPEAN  360
HNAATFLERF DEALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-26342506216Protein SCARECROW
5b3h_D2e-26342506216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo030049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLA0A1E5WC050.0A0A1E5WC05_9POAL; Scarecrow-like protein 3 (Fragment)
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-68scarecrow-like 3