PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029861.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 213aa    MW: 24090.3 Da    PI: 4.9228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029861.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.91.2e-152583255313
        GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                 ++f eal yysa+fd+l+a++pr+++  ++vEr l+g+ + nv+a eg++r+er et +
  Do029861.1  25 DEFREALFYYSAIFDMLDATIPRDNDPHMVVERYLIGWCALNVIAYEGSDRVERPETSG 83 
                 5799****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.0E-132583IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
LPFKFQSISA KWETLCADDL NIDPDEFREA LFYYSAIFDM LDATIPRDND PHMVVERYLI  60
GWCALNVIAY EGSDRVERPE TSGRCETTRQ DLDYLQAFPV CPHITYEGSC SSLGVSNRSP  120
HPLPSPSGAH LLPAYEEGVR KPRIQQPPLL ARLGGGAEGV RWRCRAAAAA RFRNQYHKDI  180
VIDIDCQWLL QGWKGLILYA MSTWIADDAI SEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029861.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VXK01e-157A0A1E5VXK0_9POAL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-15GRAS family protein