PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28032.9 Da PI: 7.4275 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 96 | 141 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd +N +f eLr +P +++Ka+ L A YI +L Do029846.1 96 THVEAERQRRDILNRRFCELRAAVPIV-----SRMDKASLLSDAATYIAQL 141 799***********************6.....49***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 24 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-15 | 90 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.1 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.09E-11 | 95 | 146 | No hit | No description |
Pfam | PF00010 | 8.0E-9 | 96 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-14 | 96 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-10 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDELVRPASS GSSPSPASFF STACQHQGLQ FVSCDDLQRW LGDDNWLDAE PSDGVTRGDE 60 GSRLPGIDDL CGEPPAPALR RRGRKPGPRS DGPALTHVEA ERQRRDILNR RFCELRAAVP 120 IVSRMDKASL LSDAATYIAQ LRDRVKQLEA ETKRAATSAA AAAVAPMAAT YSLGVQEKLE 180 VRMVGREAAA LLLTTTPSQR HAPARFMLAL RSLNLPVQHA CVCLVGGMTV QDAVVDVPAA 240 LRDERGLHAA LLYMLQQTAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-16 | 95 | 151 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029846.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822542.1 | 8e-99 | transcription factor MYC3-like | ||||
TrEMBL | A0A1E5W622 | 0.0 | A0A1E5W622_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00117.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 7e-29 | bHLH family protein |