PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do029814.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 328aa MW: 37509.4 Da PI: 6.913

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do029814.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	217.9	5.4e-67	18	320	74	373
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfA 169 e l+a++++ ++ + k++h+ +I + ++g++r+H++D++i +QW+ L + La+R++gpp +++i ++ ++++ + +ee + rL+k+A Do029814.1 18 AMEFLKAYNIYMSACYFKKVAHIFSALTIERVMKGKSRLHVVDYGIHCAFQWAGLVRWLAKREGGPPsEMKIAAICCSQPSlfPVQWIEEQQYRLSKYA 116 67899********************************************************999879*988777778************ PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +elg+pf f+v v++++e++ +e+L+++ +E+l+V+ ++ +l de s +rd+vL+ +k+++P+v++ + +++h ++ Fl rf e l yysa Do029814.1 117 SELGLPFVFEV-VTTEWEKVCIENLNLDADEVLVVSDLFNFSTLKDEGIFFGSpnPRDTVLSNIKKMRPDVFIQSVLNCSH-GSCFLSRFREMLFYYSA 213 ******9.799**************************99987666559*********************.678********** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 lfd+l+a +prese r+++E+ llg + n++aceg + ++r e++++W++r ++aG++++pl+ +++ k ++k++ +g+ + e+ ++l++gWk+r Do029814.1 214 LFDMLDAVVPRESEPRSVLEQDLLGCCALNAIACEGVDVVQRPEKYRQWQSRNQRAGLRQLPLRPVVVEVLKDQIKKHHHKGFYLSEDGQWLLQGWKGR 312 *********************************************************************************************** PP GRAS 366 pLvsvSaW 373 L++ W Do029814.1 313 ILIAHLTW 320 *98888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.31	1	301	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-64	18	320	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGTGSQLLKL LMEEGPSAME FLKAYNIYMS ACYFKKVAHI FSALTIERVM KGKSRLHVVD 60 YGIHCAFQWA GLVRWLAKRE GGPPSEMKIA AICCSQPSLF PVQWIEEQQY RLSKYASELG 120 LPFVFEVVTT EWEKVCIENL NLDADEVLVV SDLFNFSTLK DEGIFFGSPN PRDTVLSNIK 180 KMRPDVFIQS VLNCSHGSCF LSRFREMLFY YSALFDMLDA VVPRESEPRS VLEQDLLGCC 240 ALNAIACEGV DVVQRPEKYR QWQSRNQRAG LRQLPLRPVV VEVLKDQIKK HHHKGFYLSE 300 DGQWLLQGWK GRILIAHLTW VVEDGSSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-26	18	321	92	379	Protein SCARECROW
5b3h_A	2e-26	18	321	91	378	Protein SCARECROW
5b3h_D	2e-26	18	321	91	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do029814.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978028.2	0.0	scarecrow-like protein 9
TrEMBL	A0A1E5V694	0.0	A0A1E5V694_9POAL; Scarecrow-like protein 14
STRING	Pavir.Ga01717.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	3e-84	SCARECROW-like 14