PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do029779.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 293aa MW: 31615.7 Da PI: 5.3886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do029779.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	186	230	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n + ++RR+ri +++ L+el+P+ +K++ +++L kA+ Y+k +q Do029779.1 186 NLAAKNRRERITERLRVLQELVPNG-----GKVDTVTMLDKAITYVKFMQ 230 7888*****************98.....8**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.697	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-12	181	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.03E-14	182	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.07E-12	182	234	No hit	No description
SMART	SM00353	2.7E-12	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	186	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MALVRDPTPP LYYDGAFIDV NHTGVEYQKL HYPQQLLEEC MIGSHPWDLE LPMDGGLGSS 60 SAFAQDGGFA NMVGVSSSPS SSVVTFDGHG EEYCAAWMDM DDTDQLSYGL VTGHAAASSV 120 ASNCFGVDSG RKNVAPAAAR QKRPRALAPP QGTQEEAVAA PKQCGGNRRA ATKPNKVPAA 180 PKDPQNLAAK NRRERITERL RVLQELVPNG GKVDTVTMLD KAITYVKFMQ LQLKVLETDA 240 FWPTPGGEAP KMSQVKEALD AILLSTAFSS QRDSQIELAA TNASMEWTNR PCC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do029779.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813345.1	2e-96	transcription factor bHLH69-like
Swissprot	Q9FJ00	2e-41	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A1E5UPT3	0.0	A0A1E5UPT3_9POAL; Transcription factor bHLH83
STRING	Pavir.Db01008.1.p	5e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	3e-43	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]