PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029712.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 353aa    MW: 38788.9 Da    PI: 6.7059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029712.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09162204754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Do029712.1 162 KKEKQRRQRLTEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 204
                 57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.671155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6162204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.61E-10164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8164224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-7164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MYHPQCELLM AHETRDLDAG QPHLTASGSV ATIPSELSFH LLHSLDAAAA VSTVTPQPTI  60
DYFFGGADPH QPAVQYEPLP PGHQHTMNML REYCNGHYTT AEPYLRGART GALVFGATDD  120
ESAAYMPGPF ESSPPPRATG GRKRSRALVS GFHGGPANGV EKKEKQRRQR LTEKYTALML  180
LIPNRTKDDR ATVISDAIEY IQELGRTVEE LTLLVEKKRR RMELQGDVVD AAPAVVPAVA  240
GEAESSEGEV APPPTVQRQP IRSTYIQRRS KDTSVDVRIV EEDVNIKLTK RRRDGCLAAA  300
SRALDDLRLD LVHLSGGKIG DCHIYMFNTK IHPSSPVFAS AVASRLMEVV DEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146GRKRSRA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643920.0BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds.
GenBankBT0645730.0BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds.
GenBankBT0689060.0BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds.
GenBankKJ7276910.0KJ727691.1 Zea mays clone pUT5630 bHLH transcription factor (bHLH16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815629.10.0transcription factor TIP2-like
SwissprotQ5JNS01e-164TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A1E5UWC60.0A0A1E5UWC6_9POAL; Transcription factor TIP2
STRINGPavir.Eb01270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-26bHLH family protein