PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do029553.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 343aa MW: 37010.2 Da PI: 6.4335

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do029553.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7e-10	147	194	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Do029553.1 147 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 194 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	143	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	145	208	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-9	147	191	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	147	198	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.0E-10	147	201	No hit	No description
CDD	cd14703	8.69E-22	148	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MQQQPEPADP PGRAFPPPPA PAARGAHHRR ARSEVAFRLP DDLGLGGGGG PDGDGFDEIG 60 SEDDLFSTFM DMDKITGADR DRAAETSSSP RPKHRHSSSV DGSGLFFSPG SGGGAGKDAA 120 ASLAEVMEAK KAMSPEQLAE LAAIDPKRAK RILANRQSAA RSKERKARYI TELERKVQTL 180 QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ LRDALNDALK QELERLKLAT 240 GETTNSSETY NMRFQHVPYN SSFFPLSQQN IAPHPGSAQL APPFLPPHPN VPNHQMLSHP 300 NTLQDIMQQD SLGRLQGLDI GKGPLVVKSE NSSISASESS STF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MQQQPEPADP PGRAFPPPPA PAARGAHHRR ARSEVAFRLP DDLGLGGGGG PDGDGFDEIG  60
SEDDLFSTFM DMDKITGADR DRAAETSSSP RPKHRHSSSV DGSGLFFSPG SGGGAGKDAA  120
ASLAEVMEAK KAMSPEQLAE LAAIDPKRAK RILANRQSAA RSKERKARYI TELERKVQTL  180
QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ LRDALNDALK QELERLKLAT  240
GETTNSSETY NMRFQHVPYN SSFFPLSQQN IAPHPGSAQL APPFLPPHPN VPNHQMLSHP  300
NTLQDIMQQD SLGRLQGLDI GKGPLVVKSE NSSISASESS STF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do029553.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033210	0.0	BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds.
GenBank	BT063263	0.0	BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795608.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-163	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1E5USX9	0.0	A0A1E5USX9_9POAL; Transcription factor RF2b
STRING	Si036380m	1e-176	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-69	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]