PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029351.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | SRS | ||||||||
Protein Properties | Length: 224aa MW: 23421.4 Da PI: 10.5261 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 109.6 | 4.9e-34 | 42 | 193 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvks.tWvpaakrrer.qqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaesk 97 g ++C+dC +ak dCah+ C CC rgf C hvks pa + +er qq+la+++++a++ a + + kr+r l+s ++ +++s+++ + +++ Do029351.1 42 GITRCRDCWLRAKADCAHRCCSNCCSGRGFVCPAHVKSsSHAPAPQCSERsQQMLASLAASASTPAavaPTRKRKRPRALHSVATPTTTSSSVGQPTAT 140 5579*********************************73589********4445555544444433222233333333333333333333333333332 PP DUF702 98 keletsslPeevsseav.frcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + l +evs +av fr+vr++ +e+aY+t+v+igGhvf+GiLyd G+++ Do029351.1 141 -ATVPEMLAREVSLDAVlFRRVRLGP----GAEVAYHTSVTIGGHVFRGILYDVGPHS 193 .333344999***999769*****97....689**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.8E-38 | 44 | 192 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.9E-11 | 150 | 191 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MPPFDAASSH SAEEGFELRR RRRLVHGAAS SSPPPRSSRG GGITRCRDCW LRAKADCAHR 60 CCSNCCSGRG FVCPAHVKSS SHAPAPQCSE RSQQMLASLA ASASTPAAVA PTRKRKRPRA 120 LHSVATPTTT SSSVGQPTAT ATVPEMLARE VSLDAVLFRR VRLGPGAEVA YHTSVTIGGH 180 VFRGILYDVG PHSRSMASTD TGGSSDGSSQ STAGGGLLDL TLRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 23 | LRRRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029351.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801651.1 | 2e-54 | protein SHORT INTERNODES-like | ||||
TrEMBL | A0A1E5V6T8 | 1e-158 | A0A1E5V6T8_9POAL; Uncharacterized protein | ||||
STRING | Si032132m | 4e-63 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21053 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-19 | Lateral root primordium (LRP) protein-related |