PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do029200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 34948.8 Da PI: 7.9618 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.8e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw + Do029200.1 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 63 | 105 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +v+a+++lG++ W++Iar ++ gRt++ +k++w+ Do029200.1 63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.62 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-31 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-17 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-18 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.06E-16 | 13 | 55 | No hit | No description |
SMART | SM00717 | 5.3E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.286 | 63 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.7E-15 | 63 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.03E-12 | 65 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 65 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MGAEAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAASSGASV 120 AVPDAAETEA EARPCKRICL SPDSPSGSGS GSGTASDRSD LSHGAGSGSG SGSGSGSGSG 180 SGSGSGSGSG QIYRPVPRSG GFEPADCAMS RRVEEEDPFT SLSLSLPGTE QRFHHDRAHS 240 QFQELLTSPS TPSPSPPPPP APVVAAAAPS SAYPFSPDFM AAMQELIRTE VQRYMASVGV 300 RSGCGASGGA ELCMPQLVEG VMRAAAERVG RMQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-40 | 8 | 112 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do029200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF679429 | 1e-153 | HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965791.1 | 1e-166 | transcription factor MYB44 | ||||
TrEMBL | A0A1E5UM16 | 0.0 | A0A1E5UM16_9POAL; Transcription factor MYB44 | ||||
STRING | Si006938m | 1e-165 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50060.1 | 9e-63 | myb domain protein 77 |