PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 333aa    MW: 34948.8 Da    PI: 7.9618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029200.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-191156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw + 
       Do029200.1 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56
                     89******************************.***********985 PP

2Myb_DNA-binding551.9e-1763105145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
       Do029200.1  63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105
                      679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.62661IPR017930Myb domain
SuperFamilySSF466894.12E-318104IPR009057Homeodomain-like
SMARTSM007175.3E-171059IPR001005SANT/Myb domain
PfamPF002491.6E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-251264IPR009057Homeodomain-like
CDDcd001678.06E-161355No hitNo description
SMARTSM007175.3E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129420.28663112IPR017930Myb domain
PfamPF002499.7E-1563105IPR001005SANT/Myb domain
CDDcd001673.03E-1265105No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2365112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGAEAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAASSGASV  120
AVPDAAETEA EARPCKRICL SPDSPSGSGS GSGTASDRSD LSHGAGSGSG SGSGSGSGSG  180
SGSGSGSGSG QIYRPVPRSG GFEPADCAMS RRVEEEDPFT SLSLSLPGTE QRFHHDRAHS  240
QFQELLTSPS TPSPSPPPPP APVVAAAAPS SAYPFSPDFM AAMQELIRTE VQRYMASVGV  300
RSGCGASGGA ELCMPQLVEG VMRAAAERVG RMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-4081124108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794291e-153HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965791.11e-166transcription factor MYB44
TrEMBLA0A1E5UM160.0A0A1E5UM16_9POAL; Transcription factor MYB44
STRINGSi006938m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.19e-63myb domain protein 77