PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 15781.9 Da PI: 4.5113 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.2 | 8.5e-31 | 1 | 91 | 11 | 101 |
DUF260 11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 kC++dC+lapyfpa++p+++a+v+++FGasnv ++l +lp +er +a++++++eA+ r++dPvyG++g++ +lq ++ ++ ela++++++ Do029084.1 1 KCSEDCILAPYFPASDPQRYACVQRIFGASNVARMLLNLPVHERGKAADTMAMEAHRRVQDPVYGCAGIVGRLQGEITAVQCELARIQAQI 91 7************************************************************************************999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.618 | 1 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-29 | 1 | 88 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
KCSEDCILAP YFPASDPQRY ACVQRIFGAS NVARMLLNLP VHERGKAADT MAMEAHRRVQ 60 DPVYGCAGIV GRLQGEITAV QCELARIQAQ IAVHAAASAT QLNAPAPAAM PQQQEQGDGQ 120 LMQYPFQGLD ALLVDVNLVD DEMNTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 1 | 86 | 21 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 1 | 86 | 21 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029084.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806770.1 | 2e-67 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 3e-31 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 3e-31 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
Swissprot | Q8LBW3 | 8e-31 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1E5VEI4 | 1e-102 | A0A1E5VEI4_9POAL; LOB domain-containing protein 12 (Fragment) | ||||
STRING | Pavir.J09684.1.p | 3e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-31 | LBD family protein |
Publications ? help Back to Top | |||
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