PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029020.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 302aa    MW: 33040 Da    PI: 5.8737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029020.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18112162256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+W+AeIrdp+    r  r++lg+f ta+ Aa+a++ a+++l+g+
  Do029020.1 112 KYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFPTADSAARAYDGAARRLRGA 162
                 8********.**********63....56*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-32111170IPR001471AP2/ERF domain
SMARTSM003803.1E-37112175IPR001471AP2/ERF domain
PROSITE profilePS5103224.579112169IPR001471AP2/ERF domain
PfamPF008471.5E-12112161IPR001471AP2/ERF domain
CDDcd000186.40E-30112171No hitNo description
SuperFamilySSF541711.31E-21112170IPR016177DNA-binding domain
PRINTSPR003674.9E-11113124IPR001471AP2/ERF domain
PRINTSPR003674.9E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MCGGAIIAEL IPASARPCRR LPVSKTWPAK NKRPWSGHGD DDFEAAFEDF EGDSEVEDEF  60
EMDDIDSDAD EEGVLAPFGF RPLSPLLTQE SHGKKRTLRA EAMRRPGRIA RKYRGVRQRP  120
WGKWAAEIRD PVRGVRVWLG TFPTADSAAR AYDGAARRLR GAKAKLNFPS SPPPDRKRRR  180
ANAYSHASTV MTNCPPTKND APASVSYSRA AVPAVLAEPG GAKKTPANEA IEPLPLRPST  240
VCTSTDDSEV FDPYVFYGEL TSYFNCGGAF EPLESMLTGG VVAEEYGTTA LWSFGDDSSL  300
CF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20111169463ATERF1
3gcc_A1e-20111169463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175179RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791795.11e-139ethylene-responsive transcription factor 1-like
TrEMBLA0A1E5W3L00.0A0A1E5W3L0_9POAL; Uncharacterized protein
STRINGPavir.Ib02796.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.35e-20related to AP2 2