PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028988.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 278aa    MW: 30531.6 Da    PI: 4.5414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028988.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-102022421055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  Do028988.1 202 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 242
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14193258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-12197254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.31E-12201246No hitNo description
PfamPF000105.2E-7202242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
METDMMAQFL GADDHCFTYE HVDESMEALA ALFLPSLDAD SNSSSSCLNY DAPPQCWPQP  60
GHSSSVTSLL DPVQNFESFE FPVMDPTDFK SPCDVPYFSE DLSPLHGNHS SSIEEEAAND  120
APATKKRKSS AAIKASKKTK KAGRKDSVSN EDGSNTYVDA QSSSSCTSEE GNLEGNENSS  180
SKKTGTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP NGTKVDISTM LEEAAQYVKF  240
LQLQIKLLSS DDMWMYAPIA YNGINISNVD LNISSQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959802.20.0transcription factor bHLH54
TrEMBLA0A1E5UZQ70.0A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRINGSi032445m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-37bHLH family protein