PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 168aa MW: 19500.4 Da PI: 7.555 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 104.4 | 1.6e-32 | 2 | 166 | 178 | 341 |
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 f+ +++++e++ +++++++p+E+l+Vn + + +l de v++ s +rd vL+ +++++P+v+++ +++++++ F +rf eal yys++fd+l+a+ Do028687.1 2 FHG-TTTKWETICVDDMNIEPDEVLIVNGITHFGNLTDEGVDIYSpsPRDVVLNNIRKMQPDVFILFVTNVSYSAPIFITRFREALFYYSSMFDMLDAT 99 777.7889*********************************9988779*************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 + r++++r +Er l+++ + nvvac+g + + e +++W+ r ++aG+k++p + +++k ++ + Do028687.1 100 ARRDNHQRFLIERGLFRKCALNVVACKGLDGVDYPEIYKQWHVRNHRAGLKQLPSNRDVVKAVREKV 166 *******************************************************999999887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.548 | 1 | 168 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-30 | 2 | 166 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MFHGTTTKWE TICVDDMNIE PDEVLIVNGI THFGNLTDEG VDIYSPSPRD VVLNNIRKMQ 60 PDVFILFVTN VSYSAPIFIT RFREALFYYS SMFDMLDATA RRDNHQRFLI ERGLFRKCAL 120 NVVACKGLDG VDYPEIYKQW HVRNHRAGLK QLPSNRDVVK AVREKVKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028687.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826966.1 | 4e-86 | scarecrow-like protein 30 | ||||
TrEMBL | A0A1E5UM70 | 1e-123 | A0A1E5UM70_9POAL; Scarecrow-like protein 9 | ||||
STRING | Pavir.Ha00318.1.p | 6e-89 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 9e-45 | GRAS family protein |