PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028570.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 334aa    MW: 35911.3 Da    PI: 4.6071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028570.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.31.4e-10277331259
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewy 59 
                 p G+rF+Ptdeel+ +yL+ k +g + +++ +++kevd+y+v+P++ +   + +++e+y
  Do028570.1 277 PSGVRFKPTDEELI-FYLRLKHAGVQkMPV-DFFKEVDVYHVHPETTKD--DDDDREMY 331
                 79************.999999888773666.99***********99862..33445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-9271320IPR003441NAC domain
PROSITE profilePS5100512.503276334IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVIVSPVEEL ASSPPLAADA AVRASQPQAS NPVPESLFDD QGTTAWSSHP PPYASTATTS  60
SGFNPSSSTT PLSLMDTFFT QSPPGACIMW PVIAEPSFYN YAPQTQCAIP PVPVPMQTTP  120
PMLVQTTSVE PSYYRQQQRT ASAAAEALIF HEDPDAHRAQ ESTKLAPRKT AAAKPVFKPP  180
KRAAARSNRA ASPRTASVAD PGTMAGQVQV QEPEQAGSVV AVAAADQIAP YTNSMALLCQ  240
EQWQLQSACS NSLGAGDQAT AVVGQEVMMG PYADTSPSGV RFKPTDEELI FYLRLKHAGV  300
QKMPVDFFKE VDVYHVHPET TKDDDDDREM YMCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5ULD50.0A0A1E5ULD5_9POAL; Uncharacterized protein (Fragment)
STRINGSi039443m2e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-07NAC 007