PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028267.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 417aa    MW: 44556.2 Da    PI: 7.6236
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028267.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17316348133
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                 Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Do028267.1 316 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 348
                 ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.24310348IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-16310364IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14312373No hitNo description
Gene3DG3DSA:3.30.50.103.9E-14314350IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.81E-14315371No hitNo description
PROSITE patternPS003440316341IPR000679Zinc finger, GATA-type
PfamPF003201.6E-15316349IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MRTQSHPSLR DVPDDLPECN GMCVSSGGLC CPDDPLHLVL HYFSAPAPAP HETSLAALEI  60
GGSLRRQEQP PPPFGWDQKS GLEDVPVLDA KSAPGGGGGD VWYRASRGLS SYVPEYMEYL  120
VDHTPDGGSE AAVCSPSCKT GAMPASGSTV SNVAPPLLAP MSAGGGLHAH GAPLGDVSGD  180
APPVPAGTFH ACRALDGVVS SDAPLLQAHA PPSACTPPTC TSSGCLTPTT SEIESPAPVW  240
QPLAWAVQRK RQRLPVKCRN RPWSLDFPLH AVPVAPLPDN PGDNNDDAKN TCHNARAIRR  300
RRLAPRQRNR EVQRVCSHCH SPDTPQWRAG PDGPGTLCNA CGIRYAANKL LPEYRPSTSP  360
SFRSDQHSNR HRKVVKLREQ KAKETLEVVH DPAPASSPML PKRNESIYVC TYMSIGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299306RRRLAPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VT900.0A0A1E5VT90_9POAL; Uncharacterized protein
STRINGSi028169m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-26GATA transcription factor 4