PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028210.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 377aa    MW: 40115.5 Da    PI: 5.6175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028210.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12176218855
                 HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  Er+RR+++N++f+ L+ +lP+ a      K +K +iL +A eY++sL+
  Do028210.1 176 SERKRREKLNDSFHALKAVLPPgA------KKDKTSILIRAREYVRSLE 218
                 6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
PROSITE profilePS5088813.84168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15169234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-11170222No hitNo description
Gene3DG3DSA:4.10.280.101.2E-12172216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9176218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00301209237No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-4217235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MESSSRLCGH GYSNNAGGGG NNGFMCGYAA ASSCTPAELQ YREEEEQQFL ISMRMNMDDE  60
GSVFVPSNDD GGVSPIGMHS PIVVDGLLDP HHHAGSFPST SSSSSLSLPS ASLSCSPESS  120
AHILAAPATS TACSQYLEVS SQMHAAASYR QQYYYQAAAA EAAPPPSVNQ LQHMFSERKR  180
REKLNDSFHA LKAVLPPGAK KDKTSILIRA REYVRSLESK VSELEEKNRS LESRLLRRDS  240
SDGARKDSDG GGNHDSAGEK VQVEITRAAK EERAAEPRDD LCTLKIVVRS PCNVTDMVLR  300
ALQCLRDRIG DGVSLVAMST SDSTSGATGV NTSPRAELTL QIKSPAAAGW EEQPVNDAVA  360
KVVADALTPP SSAAAPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.11e-118putative transcription factor bHLH041
TrEMBLA0A1E5WNJ40.0A0A1E5WNJ4_9POAL; Uncharacterized protein
STRINGSi001328m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-15bHLH family protein