PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 186aa MW: 19725.7 Da PI: 11.6902 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 70.1 | 7e-22 | 2 | 106 | 22 | 98 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesssssasnsssg........... 88 vRls+++a++f+dLqd LGfd++sk+ieWL+++a ai +l+ + + + s s g Do028177.1 2 VRLSVPTAIQFYDLQDCLGFDQPSKAIEWLINAASDAIEKLPALdlsafaalpgpgeadagkvkqQ----------QGSRS------Gggstsetskgs 84 8*******************************************7766666655543333332210..........11111......111112223333 PP TCP 89 ............kaaksaaksk 98 + ++ a ++ Do028177.1 85 elsfsrsgarggRGRRRARQGG 106 3334443344442222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 22.82 | 1 | 42 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.7E-19 | 2 | 105 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
CVRLSVPTAI QFYDLQDCLG FDQPSKAIEW LINAASDAIE KLPALDLSAF AALPGPGEAD 60 AGKVKQQQGS RSGGGSTSET SKGSELSFSR SGARGGRGRR RARQGGHRHQ HLGAGRVLHR 120 AAHRRRGAAR GGATEEAARV AREGGSEGGT RRRRWLPEAR WGREGCAGGG REGGRRGHFG 180 LYAVLX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-15 | 2 | 43 | 14 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-15 | 2 | 43 | 14 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028177.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q93V43 | 2e-21 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A3L6TG38 | 1e-42 | A0A3L6TG38_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia00505.1.p | 9e-43 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-18 | TCP family protein |
Publications ? help Back to Top | |||
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