PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33741.3 Da PI: 5.7942 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv++++ +G g+W++ ar g++Rt+k+c++rw++yl Do028175.1 45 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYL 92 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.3e-18 | 98 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d+++++G++ W++Ia++++ gRt++++k++w++ Do028175.1 98 RGNFTADEQLLILDLHTRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 141 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.448 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 43 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 45 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 46 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-10 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 23.58 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-15 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 98 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 100 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.84E-11 | 100 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAASQRSRSN DTAARAWSPD TPVELDDDQG QQGRAQEEEQ LELRRGPWTV DEDLTLVNYI 60 ADHGEGRWNS LARAAGLKRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHTRWGNRW 120 SKIAQHLPGR TDNEIKNYWR TRVQKHAKEL NCDANSKRFK DTMRYLWMPH LVDVDDHRRR 180 LLQAQQQQPH AADVFAAAHA AGMAVTSSSD SFATADSSYD EVGGIYANMH VGEMLVMNGG 240 DWGQDTNQGL WPAADQSSVQ ATAGGHQFQD PELSGWVQGF SEGITENIWA LEDIWKIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 32 | 145 | 14 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028175.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069744 | 1e-170 | BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds. | |||
GenBank | KJ727638 | 1e-170 | KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962755.1 | 1e-158 | transcription factor JAMYB | ||||
Swissprot | Q2QZJ8 | 1e-106 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A1E5WNI2 | 0.0 | A0A1E5WNI2_9POAL; Transcription factor MYB108 | ||||
STRING | Si022831m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-73 | myb domain protein 112 |
Publications ? help Back to Top | |||
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