PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 86aa MW: 9801.45 Da PI: 11.9835 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.3 | 3.5e-33 | 23 | 76 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR Do028089.1 23 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 76 8****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.653 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-32 | 19 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 21 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 23 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-11 | 24 | 75 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MVRTVVGRER SGGVRQYNRS KVPRLRWTPD LHHCFVHAIH KLGGQDKATP KRVLQLMGVG 60 GLTISHVKSH LQMYRNMRND IGMQGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-20 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-20 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028089.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068910 | 1e-104 | BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds. | |||
GenBank | HQ858702 | 1e-104 | HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds. | |||
GenBank | KJ726813 | 1e-104 | KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698081.1 | 9e-55 | uncharacterized protein LOC101766248 | ||||
Refseq | XP_025792174.1 | 1e-54 | uncharacterized protein LOC112873442 | ||||
Swissprot | Q700D9 | 3e-27 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A1E5UIK9 | 1e-56 | A0A1E5UIK9_9POAL; Putative Myb family transcription factor | ||||
TrEMBL | A0A2T8I6K3 | 2e-53 | A0A2T8I6K3_9POAL; Uncharacterized protein | ||||
TrEMBL | K4AB70 | 2e-53 | K4AB70_SETIT; Uncharacterized protein | ||||
STRING | Si036127m | 3e-54 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-31 | G2-like family protein |