PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028053.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 370aa    MW: 39153.7 Da    PI: 9.374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028053.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-1485130454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RRd++N +f eLr  +P+       +++Ka++L  A  YI++L
  Do028053.1  85 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASVLADAAAYISEL 130
                 799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.46681130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1684145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-1385135No hitNo description
Gene3DG3DSA:4.10.280.109.6E-1785144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-1185130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-1387136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MADELAYPAS TCSSPSPASL FSTAGHHQEL DFVSSEVLEQ WLGSEDCLDG AAWGDDGLSG  60
GQPPAPAPKK RGRKPGPRTN GPPISHVEAE RQRRDKLNRR FCELRAAVPT VSRMDKASVL  120
ADAAAYISEL RDRVEQLEAE AKQAAAVAVV ALAHSSPGVL EKLEVRMVVG QEAAALRLTT  180
TAARHAPARL MLALRSLDLP VLHACVCHVV GGVTVQDAVV DVPAATLRDE RRLHHALLCR  240
LQQSGLLDAL TAALCTDATH HAAATIHSLV LFGAALYLPN RATKDALFGV VLYPPNRATP  300
VSLSAVQALF VLVITDGRNG IVEPGGAATA LGGWGGARRQ AGGRAKRGTE SGELIPVGRR  360
RRRGRRARTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1883143666Transcription factor MYC2
5gnj_B1e-1883143666Transcription factor MYC2
5gnj_E1e-1883143666Transcription factor MYC2
5gnj_F1e-1883143666Transcription factor MYC2
5gnj_G1e-1883143666Transcription factor MYC2
5gnj_I1e-1883143666Transcription factor MYC2
5gnj_M1e-1883143666Transcription factor MYC2
5gnj_N1e-1883143666Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358365RRRRRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444645.12e-92transcription factor bHLH14
TrEMBLA0A1E5UIG10.0A0A1E5UIG1_9POAL; Uncharacterized protein
STRINGSb07g025330.18e-92(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-16bHLH family protein