PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027932.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 310aa    MW: 32898.5 Da    PI: 8.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027932.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-1475118755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ErrRR+r+N+++  Lr+++P+      +K++Ka+i++ A+eYI +Lq
  Do027932.1  75 ATERRRRRRLNDRLYALRSVVPNI-----TKMDKASIVKDAIEYILQLQ 118
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91768117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1774136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1674123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1675133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1275118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-783114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDPAMGDDAS LECFWDCLDS DGLQSLYIDA DGDSAVSGGQ HHDGYSSAPD AGSNSTAATK  60
GAGAGTRTGS TVVVATERRR RRRLNDRLYA LRSVVPNITK MDKASIVKDA IEYILQLQQL  120
ERQLLAELAL LETVVSAHQL LNGMPSTGAA AFAVAEDDCC AGHAAVSPTK KMKRNPSFSS  180
SPASHGSTSP PVDALQVRVS GAGDKVLVVS VACRHRRDAV TKLCGALEGL RLRVIAANVT  240
AVSGTVTHTA LVQVQYELNR RMSSSFPSSL GVLGSLLLCL SWSVHGIGNT WIRMATRLCF  300
HCFSLLLKSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683ERRRRRRL
27782RRRRRR
38087RRRLNDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027932.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.17e-85transcription factor bHLH35 isoform X1
TrEMBLA0A3L6RTN16e-95A0A3L6RTN1_PANMI; Uncharacterized protein
STRINGPavir.Aa02630.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-21bHLH family protein